1256 update min and latest Ubuntu version (#1257)

- Since Ubuntu 20.04 was retired, we had to update our min versions for the CI (Min: 22.04/ latest 24.04)
- Update Compiler (GCC, Clang) versions

Co-authored-by: reneSchm <49305466+reneSchm@users.noreply.github.com>

Author: HenrZu

.github/actions/linux-build/action.yml

@@ -44,17 +44,17 @@ runs:
         fi
         if [[ "${{ inputs.compiler }}" == "gcc" ]]; then
           if [[ "${{ inputs.version }}" == "min" ]]; then
-            sudo apt-get -qq -y install gcc-9
-            sudo apt-get -qq -y install g++-9
-          else        
             sudo apt-get -qq -y install gcc-11
             sudo apt-get -qq -y install g++-11
+          else        
+            sudo apt-get -qq -y install gcc-13
+            sudo apt-get -qq -y install g++-13
           fi
         elif [[ "${{ inputs.compiler }}" == "clang" ]]; then
           if [[ "${{ inputs.version }}" == "min" ]]; then
-            sudo apt-get -qq -y install clang-6.0
-          else
             sudo apt-get -qq -y install clang-14
+          else
+            sudo apt-get -qq -y install clang-17
           fi
         fi
     - name: ccache 
@@ -78,19 +78,19 @@ runs:
         cd cpp
         if [[ "${{ inputs.compiler }}" == "gcc" ]]; then
           if [[ "${{ inputs.version }}" == "min" ]]; then
-            export CC=/usr/bin/gcc-9
-            export CXX=/usr/bin/g++-9
-          else        
             export CC=/usr/bin/gcc-11
             export CXX=/usr/bin/g++-11
+          else        
+            export CC=/usr/bin/gcc-13
+            export CXX=/usr/bin/g++-13
           fi
         elif [[ "${{ inputs.compiler }}" == "clang" ]]; then
           if [[ "${{ inputs.version }}" == "min" ]]; then
-            export CC=/usr/bin/clang-6.0
-            export CXX=/usr/bin/clang++-6.0
-          else        
             export CC=/usr/bin/clang-14
             export CXX=/usr/bin/clang++-14
+          else        
+            export CC=/usr/bin/clang-17
+            export CXX=/usr/bin/clang++-17
           fi
         else
           echo "unknown value for action input: compiler"

.github/actions/test-py/action.yml

@@ -20,7 +20,7 @@ runs:
       run: |
         sudo apt-get -qq update
         if [[ "${{ inputs.package }}" == "generation" ]]; then
-          sudo apt-get -qq -y install python3-pip gnupg clang libclang-dev cmake
+          sudo apt-get -qq -y install python3-pip gnupg clang-18 libclang-18-dev cmake
         else
           sudo apt-get -qq -y install python3-pip gnupg
         fi

.github/workflows/epidata_main.yml

@@ -20,7 +20,7 @@ on:
 
 jobs:
   pre-commit:
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
@@ -29,7 +29,7 @@ jobs:
     - uses: pre-commit/action@v3.0.1
 
   build-py-epidata:
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -39,7 +39,7 @@ jobs:
 
   build-py-plot:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -52,7 +52,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -67,7 +67,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -77,7 +77,7 @@ jobs:
           coverage: ON 
 
   merge-artifacts:
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     strategy:
       matrix:
         packages: [epidata, plot]
@@ -91,7 +91,7 @@ jobs:
 
   test-pylint-epidata:
     needs: build-py-epidata
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-pylint
@@ -100,7 +100,7 @@ jobs:
 
   test-pylint-plot:
     needs: build-py-plot
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-pylint
@@ -109,7 +109,7 @@ jobs:
 
   download-data:
     needs: build-py-epidata
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     continue-on-error: true
     steps:
       - uses: actions/checkout@v4

.github/workflows/main.yml

@@ -19,7 +19,7 @@ on:
 
 jobs:
   pre-commit:
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
@@ -36,9 +36,9 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-22.04"
+            os: "ubuntu-latest"
           - version: "min"
-            os: "ubuntu-20.04"
+            os: "ubuntu-22.04"
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
@@ -52,7 +52,7 @@ jobs:
 
   build-cpp-gcc-no-optional-deps:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-build
@@ -64,7 +64,7 @@ jobs:
 
   build-cpp-gcc-openmp:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-build
@@ -114,9 +114,9 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-22.04"
+            os: "ubuntu-latest"
           - version: "min"
-            os: "ubuntu-20.04"
+            os: "ubuntu-22.04"
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
@@ -127,7 +127,7 @@ jobs:
 
   merge-test-artifacts:
     needs: [test-cpp-gcc_clang, test-cpp-msvc, test-py-surrogatemodel]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - name: merge-coverage-artifacts
         uses: actions/upload-artifact/merge@v4
@@ -153,7 +153,7 @@ jobs:
   test-cpp-gcc-no-optional-deps:
     if: github.event.pull_request.draft == false
     needs: build-cpp-gcc-no-optional-deps
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/linux-test
@@ -164,7 +164,7 @@ jobs:
   test-cpp-gcc-openmp:
     if: github.event.pull_request.draft == false
     needs: build-cpp-gcc-openmp
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     timeout-minutes: 30
     env:
       OMP_NUM_THREADS: 4
@@ -216,9 +216,9 @@ jobs:
         version: ["latest", "min"]
         include:
           - version: "latest"
-            os: "ubuntu-22.04"
+            os: "ubuntu-latest"
           - version: "min"
-            os: "ubuntu-20.04"
+            os: "ubuntu-22.04"
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
@@ -247,7 +247,7 @@ jobs:
 
   build-py-generation:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -257,7 +257,7 @@ jobs:
 
   build-py-simulation:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -267,7 +267,7 @@ jobs:
 
   build-py-surrogatemodel:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     container: quay.io/pypa/manylinux_2_28_x86_64
     steps:
       - uses: actions/checkout@v4
@@ -281,7 +281,7 @@ jobs:
       matrix: 
         version: ["3.8", "3.11"]
     needs: build-py-generation
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -294,7 +294,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -307,7 +307,7 @@ jobs:
     strategy:
       matrix: 
         version: ["3.8", "3.11"]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-py
@@ -318,15 +318,15 @@ jobs:
 
   test-docs:
     if: github.event.pull_request.draft == false
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test-docs
 
   codecov:
     if: github.event.pull_request.draft == false
     needs: merge-test-artifacts
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - name: Install dependencies
@@ -354,7 +354,7 @@ jobs:
     permissions:
       contents: write
     needs: [test-docs, merge-test-artifacts]
-    runs-on: ubuntu-22.04
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - name: Install dependencies

.readthedocs.yaml

@@ -1,7 +1,7 @@
 version: "2"
 
 build:
-  os: "ubuntu-22.04"
+  os: "ubuntu-latest"
   apt_packages: 
     - libmagic1
   tools:

cpp/CMakeLists.txt

@@ -89,6 +89,7 @@ if(CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "DEBUG")
         setup_target_for_coverage_lcov(
             NAME coverage
             EXECUTABLE memilio-test
+            LCOV_ARGS --ignore-errors gcov,mismatch
             EXCLUDE "${CMAKE_SOURCE_DIR}/tests*" "${CMAKE_SOURCE_DIR}/simulations*" "${CMAKE_SOURCE_DIR}/examples*"
             "${CMAKE_SOURCE_DIR}/memilio/ad*" "${CMAKE_BINARY_DIR}/*" "/usr*" "${CMAKE_SOURCE_DIR}/*.F"
         )
@@ -127,10 +128,10 @@ endif()
 
 if(CMAKE_CXX_COMPILER_ID MATCHES "GNU")
     string(APPEND MEMILIO_CXX_FLAGS_ENABLE_WARNING_ERRORS
-        "-Wno-unknown-warning;-Wno-pragmas;-Wno-deprecated-copy;-Wno-expansion-to-defined;")
+        "-Wno-unknown-warning;-Wno-pragmas;-Wno-deprecated-copy;-Wno-expansion-to-defined;-Wno-stringop-overread;")
 elseif(CMAKE_CXX_COMPILER_ID MATCHES "Clang")
     string(APPEND MEMILIO_CXX_FLAGS_ENABLE_WARNING_ERRORS
-        "-Wno-unknown-warning-option;-Wno-deprecated;-Wno-gnu-zero-variadic-macro-arguments;")
+        "-Wno-unknown-warning-option;-Wno-deprecated;-Wno-gnu-zero-variadic-macro-arguments;-Wno-stringop-overread;")
 endif()
 
 if(MEMILIO_ENABLE_WARNINGS_AS_ERRORS)

cpp/README.md

@@ -17,11 +17,11 @@ Directory structure:
 MEmilio C++ uses CMake as a build configuration system (https://cmake.org/)
 
 MEmilio C++ is regularly tested with the following compilers (list will be extended over time):
-- GCC, versions 9.4 and 11.4
-- Clang, version 6.0 and 14.0
+- GCC, versions 11 and 13
+- Clang, version 14 and 17
 - MSVC, versions 19.29 (Visual Studio 2019) - 19.38 (Visual Studio 2022)
 
-MEmilio C++ is regularly tested on gitlub runners using Ubuntu 18.04 and 20.04 and Windows Server 2016 and 2019. It is expected to run on any comparable Linux or Windows system. It is currently not tested on MacOS.
+MEmilio C++ is regularly tested on gitlub runners using Ubuntu 22.04 and 24.04 and Windows Server 2019 and 2022. It is expected to run on any comparable Linux or Windows system. It is currently not tested on MacOS.
 
 The following table lists the dependencies that are used. Most of them are required, but some are optional. The library can be used without them but with slightly reduced features. CMake will warn about them during configuration. Most of them are bundled with this library and do not need to be installed manually. Bundled libraries are either included with this project or loaded from the web on demand. For each dependency, there is a CMake option to use an installed version instead. Version compatibility needs to be ensured by the user, the version we currently use is included in the table.
 

cpp/tests/test_io_cli.cpp

@@ -20,6 +20,7 @@
 #include "memilio/config.h"
 #include "memilio/io/cli.h"
 #include "temp_file_register.h"
+#include "utils.h"
 
 #ifdef MEMILIO_HAS_JSONCPP
 
@@ -149,7 +150,7 @@ using Params = mio::ParameterSet<A, B, C, D>;
 // using BadParams = mio::ParameterSet<A, CollisionA>;
 TEST(TestCLI, test_option_verifier)
 {
-    GTEST_FLAG_SET(death_test_style, "threadsafe");
+    mio::set_death_test_mode();
 
     EXPECT_DEBUG_DEATH(mio::details::cli::verify_options(mio::ParameterSet<A, NameCollision>()),
                        ".*Options may not have duplicate fields\\. \\(field required\\)");
@@ -212,7 +213,7 @@ TEST(TestCLI, test_set_param)
 
 TEST(TestCLI, test_write_help)
 {
-    GTEST_FLAG_SET(death_test_style, "threadsafe");
+    mio::set_death_test_mode();
 
     std::stringstream ss;
     const std::string help =
@@ -239,7 +240,7 @@ TEST(TestCLI, test_write_help)
 
 TEST(TestCLI, test_print_options)
 {
-    GTEST_FLAG_SET(death_test_style, "threadsafe");
+    mio::set_death_test_mode();
 
     const std::vector<std::string> args{"", "--print_option", "a", "D"};
     const int argc = (int)args.size();