Releases · Sage-Bionetworks/prov-service

Merge pull request #47 from Sage-Bionetworks/add-get-activity-object (9e40891)
add utility function to convert node data to a camelCase dict (9b5bee4)
add internal/graph contoller logic to get activity objects for a reference (926033d)
add autogen controller function to get activity objects for a reference (9a700f2)
add path to retrieve activity objects associated with a reference (b66c2a7)
Merge pull request #46 from Sage-Bionetworks/add-graph-filter-params (8b90e2e)
update requirements to include luqum for lucene query parsing (bf15d64)
add util function to ensure strings/phrases are quoted (1598ea1)
add filter logic to internal/graph activities controller (c3386f4)
update autogen activities controller (09a1320)
add filter param to openapi spec (5d3d973)
Merge pull request #45 from Sage-Bionetworks/add-used-edit-endpoints (ac87080)
update docker-compose to use OngDB image for neo4j (2fed8c0)
update tests (ce55434)
add controller methods for appending used to activities (a6c99ba)
describe PUT path for adding new 'used' rels in openapi spec (60a54e9)
add ActivityEditor class for modifying existing activities (c2ca734)
add option to lookup activity by ID (9b5695e)
make all id parameters more explicit (5e701f8)
update flask config to use pythonic params (d8a7c46)
add delete endpoint for an activity's used reference (cec0c0a)
Merge pull request #42 from Sage-Bionetworks/fix-activity-reuse (304357e)
pin version of openapi-generator in build script (b3f91dd)
update activity node lookup so new nodes are created for new 'generated' refs (0c35e76)
Update docker-compose.phccp.yml (2d4d7c1)

update build data to match latest PHC portal (b2ab72b)
Merge pull request #40 from Sage-Bionetworks/fix-duplicated-nodes (328cf45)
fix lookup for existing nodes to avoid creating duplicates (89827d3)
fix bug in activity builder that resulted in 'class' not assigned (7f51ca4)
Merge branch 'develop' of https://github.com/Sage-Bionetworks/prov-service into develop (89e96b1)
fix python version to 3.6 (d6e8717)
Update README.md (5d4b407)
Update openapi.yaml (726a445)
Merge pull request #39 from Sage-Bionetworks/update-deploy-docs (aa34a11)
update README with latest package info (f1e7b87)
Merge pull request #38 from Sage-Bionetworks/api-examples (da1dbc7)
bump version in package metadata (9a36704)
add more comprehensive examples for response bodies (055a03b)
add more realistic (and accurate) examples to openapi spec (a6b9598)
add 'batch' endpoint for creating activities (7c1ac2e)
keep autogen in-line models (even though they aren't used) (0adbc7f)
update activities controller with new response structure (0e78ff8)
update autogen models and controllers (5664794)
update openapi spec to change json structure for graph response (2f64fc1)
fix response serialization for leading underscore keys (1236c97)
move environment vars from travis config to repo settings (c94a0bf)
Merge pull request #37 from Sage-Bionetworks/add-activities-post (6de665d)
rename test modules; remove unused test modules (4572a89)
clean up util module a bit (6c5d203)
add tests for activities controller fxns (99129c9)
add mock activity request (6c26b95)
add working implementation of create_activity controller fxn (97e8a7a)
use hosted images for phccp docker-compose (dfff559)
Merge pull request #36 from Sage-Bionetworks/travis-deploy (74cd475)
add docker/codedeploy steps to travis config (d2d4a75)
Merge pull request #35 from Sage-Bionetworks/update-docker-compose (4927f3a)
remove note about storing credentials in README (2a54dd8)
add @lukasz-rakoczy's fix for neo4j auth (6c93686)
add new CLI opts to dev docker-compose (b0c409b)
add separate docker-compose config for prod phccp (465508b)
Merge pull request #34 from Sage-Bionetworks/add-cli (5cc6739)
update README with cli instructions/examples (9e9663f)
add click library to requirements (58bf48b)
add simple click-based cli to app entrypoint (df6d5fb)
add examples for non-enum path/query params (2b4b295)
Merge pull request #29 from Sage-Bionetworks/subgraph-api-queries (153205a)
add support for neo4j json format in openapi spec (d6474e9)
fix parameter handling for full graph endpoints (4f0391b)
add more example responses for agent/reference-based requests (efdcdc9)
reduce lag time in mock activity creation (2bfd886)
add logic for new api params in controllers; clean up autogen config (85ebb8c)
fix a few minor bugs in OpenAPI spec (582d2aa)
add sort params; use common models for parameters (369d978)
add delay in mock activity creation to ensure distinct 'created_at' (97cd0e3)
update get_datetime wrapper to keep distinct for each call (49fec1c)
update graph implementation of controllers (c15db83)
update autogen controllers for consolitated endpoints (916960f)
move agent/reference endpoints under activities path (96f5e05)
add basic controllers for ref/agt subgraph endpoints (fd8809e)
update graph controller methods to match API arguments (8915938)
fix neo4j authetication in docker-compose (23a8ca2)
remove wait-for-it script (2601c11)
add check with socket for port availability (c70e880)
add option to specifiy flask server host with env var (b2922d4)
try different strategy for updating neo4j auth (d2ef004)
update app config to use runtime env vars for neo4j (76859b2)
add instructions to README for docker compose use (0585586)
update docker-compose to include neo4j image (df9b518)
add wait-for-it script to Dockerfile (725947d)
add more logging, use logger consistently (ba85e67)
remove dependency on flask_neomodel library (6084742)
fix docker run command in codegen script (513f7e7)
fix docker run command in codegen script (a231707)
Merge branch 'master' of https://github.com/Sage-Bionetworks/prov-service (81e52e0)
add codegen (via docker) to travis build (2ac9031)
Update README.md (da9932e)
Update README.md (131762c)
Merge pull request #24 from Sage-Bionetworks/refactor-prov-models (0450c42)
fix additional conflict activities_controllers (f8638ab)
resolve merge conflicts (9bc8bb8)
update README with codegen instructions (df4296a)
update coveralls coverage config (d3dee85)
move controller implementations to graph package (65fc97c)
(re)configure openapi-codegen for models and controllers (5581b4e)
clean up old files and folders (24ec625)
add unit tests for graph classes and operations (afb79de)
fix imports in controllers (a0ccf7b)
update app init to use latest mocking logic (0ed2ea1)
rename and reorganize mocking modules and models (28955ee)
update graph classes to inherit from base models, behave more like mock classes (925cad5)
fix Star definition in mock data, recreate examples (59edecd)
Merge branch 'master' of https://github.com/Sage-Bionetworks/prov-service (8969f56)
fix export json, add option for neo4j format (3c16521)
Update README.md (170000f)
add mock graph JSON as example data (c52147b)
fix serialization in d3 export (f54f8c0)
Merge pull request #23 from Sage-Bionetworks/refactor-prov-models (c113833)
exclude autogen models and mock modules from coverage (beb10d2)
update dependencies in requirements.txt (2d704c0)
update init_db to use latest mock functionality (c7c2e51)
assorted debuging and cleanup (b7e3951)
enable reuse of existing ref (used) and agt nodes (dcd779b)
update init_db to use latest mock graph module (ca7e5ff)
update mock graph code to enable reuse of existing nodes (cca91f5)
clean up properties/attributes for mock classes (90d9220)
update mocker class to save to graph (650a615)
add convenience fxn for getting current datetime (799cc58)
update graphdatabase fxns to work with latest model (306170e)
simplify and cleanup PHC prov model (0bc0c9f)
Refactor mockup_data subpackage (e510785)
refactor mock node models to inherit from OpenAPI classes (16d75ee)
add auto-generated models from OpenAPI spec (86f0a7d)
add Relationship model to OpenAPI spec, distinguish D3 objects/formats (82d71ec)
use explicit imports for mockup_data modules (6775130)
move mockup package under synprov (fd3e060)
Merge pull request #21 from Sage-Bionetworks/update-openapi (12a9a12)
fix d3 json response serialization (b910be5)
add operation to return graph in d3-compatible json format (0d3d740)
add more properties to model schemas, use composition (74a3f9f)
fix activities controller (841d687)
remove old database initiation module (ee7abdf)
remove old mongo/graphql modules (ac5167a)
simplify controllers to match API spec (e0647a9)
add more detailed specification of graph response model (f24663a)
simplify REST API, add more docs (b264f00)
add coveralls config (faef8d0)
Update .travis.yml (6bc2bed)
Update .travis.yml (0af80af)
Update .travis.yml (f0e3aba)
add build status and coverage badges to README (a3e7318)
add coverage to travis test stage (513916d)
set up dependencies/config for pytest-cov (15902fd)
Merge pull request #18 from Sage-Bionetworks/repo-tidying (f2fd778)
add images to README (fdde502)
move build scripts/data to separate folder (01be2df)
update overview and instructions in README (2b6d9c4)
remove unused files from openapi-generator (85cfef7)
Merge pull request #16 from Sage-Bionetworks/neo4j-mockup-rec (a0c3265)
Update activity.py (f1fa8bf)
Update relationship.py (cdfc27f)
added init.py file (2b6d590)
added init.py file (e8d736a)
mockup records creation (e9680d1)
do not use it (8978cdd)
added ingestion code (4f1a8fb)
Merge pull request #9 from Sage-Bionetworks/neo4j-endpoint (f490fc7)
Merge branch 'master' into neo4j-endpoint (17e957d)
added :LABEL for entity (7bcfa2b)
Update README.md (20efe73)
entities model changes, added relationships (3d4209b)
output configuration customization (b316174)
minor updates (fe10995)
Add files via upload (e84bc4e)
Create README.md (143fda9)
update test requirements to fix pluggy (?) error (809dc71)
fix healthcheck test (f40e9d2)
update travis to run pytest (a657acd)
update requirements (b68c69f)
add simple test for app setup (healthcheck) (f6e13ce)
silence old nosetests, switch to pytest (029a16f)
add healthcheck endpoint (8631eea)
refactor slightly to use app factory for easier testing (c5ef2a0)
add timeout to travis to get exit code (cd5dda0)
make sure travis config directory exists (b8e03c6)
move auth file to appropriate location (8dd4e3d)
use bash instead of sh for auth script (ac54f50)
fix env vars in travis (fc0b59e)
add neo4j auth build script to travis (4f92757)
use shasum instead of sha256sum in auth build script (006406a)
use env vars for neo4j username/password (88bd1b8)
Change username and password for Neo4j (3690069)
Neo4j username and password change script (c04df50)
Change username and password for Neo4j (48d82a9)
try updating password with neo4j-admin (6ce5739)
add neo4j pwd update to travis (1dd5791)
remove mongo refs from agents, references controllers (faad9cb)
fix default neo4j password (aab6f45)
use default credentials for neo4j (c81d1dd)
add neo4j install to travis config (5ce4aa8)
remove additional references to mongo (eb14030)
flask-neomodel not in pypi, use git path (c24c657)
fix flask-neomodel requirement (dfed6bb)
fix requirements for neo4j instead of mongo (5184f1c)
update api spec and add create activities operation (f593343)
get initial version of service working with neo4j (3d904e2)
update base path for prov server (f63b777)
Add used, generated, agents endpoints to activities pa...

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Releases: Sage-Bionetworks/prov-service

1.0.0-alpha.3

1.0.0-alpha.2

Release 1.0.0-alpha.1

Release 1.0.0-alpha.0