为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

An R package to find the gaps in metabolic networks, and fill it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also include the option to dow…

A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

Phylogenetic orthology inference for comparative genomics

IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems

An R library for conducting analyses on COMPASS data.

A RMosek optimization interface for the Sybil package

R package to Import and Modify SVG (XML) Graphic Files

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Repository for scripts related to reproducing the results of an individual publication

The consensus GEM for Saccharomyces cerevisiae

Benchmark datasets for WGS analysis

Mummer alignment tool

Processing pipeline for pan-genome visulization and exploration

ODG: Omics Database Generator - Integration toolkit for -omics data

Fast genome-wide functional annotation through orthology assignment

mist R package files

📜 Discover and install useful RStudio addins

Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).

Tool Shed repositories maintained by the Intergalactic Utilities Commission

IslandPath standalone software

Documentation for Evolview

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

Cytoscape: an open source platform for network analysis and visualization

GUI/CommandLine Tool Box for biologistists to utilize NGS data.