FIX repo2data redownloading data unless the directors are organised t…

…his way...
SIMEXP · May 16, 2023 · d514116 · d514116
1 parent ed1758b
commit d514116
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Showing 12 changed files with 10 additions and 10 deletions.
diff --git a/binder/data_requirement.json b/binder/data_requirement.json
@@ -1,3 +1,3 @@
 { "src": "10.5281/zenodo.7764979",
-  "dst": ".",
+  "dst": "..",
   "projectName": "inputs"}
diff --git a/content/_toc.yml b/content/_toc.yml
@@ -6,14 +6,14 @@ root: index.md
 parts:
   - caption: Research report
     chapters:
-    - file: research_report/results-group.md
-    - file: research_report/results-atlas.md
-    # - file: research_report/contributions.md
-    - file: research_report/references.md
+    - file: notebooks/results-group.md
+    - file: notebooks/results-atlas.md
+    # - file: notebooks/contributions.md
+    - file: notebooks/references.md
   - caption: Appendices and supplemental material
     chapters:
-    - file: supplementary_materials/CITATION.md
-    - file: supplementary_materials/ohbm2022abstract.md
+    - file: notebooks/CITATION.md
+    # - file: notebooks/ohbm2022abstract.md
   - caption: Workflow documentation
     chapters:
     - file: docs/software_implemetation.md

diff --git a/content/inputs b/content/inputs
@@ -1 +1 @@
-../inputs
+../inputs/
diff --git a/content/supplementary_materials/CITATION.bib → content/notebooks/CITATION.bib b/content/supplementary_materials/CITATION.bib → content/notebooks/CITATION.bib
diff --git a/content/supplementary_materials/CITATION.md → content/notebooks/CITATION.md b/content/supplementary_materials/CITATION.md → content/notebooks/CITATION.md
diff --git a/content/research_report/contributions.md → content/notebooks/contributions.md b/content/research_report/contributions.md → content/notebooks/contributions.md
diff --git a/...pplementary_materials/ohbm2022abstract.md → content/notebooks/ohbm2022abstract.md b/...pplementary_materials/ohbm2022abstract.md → content/notebooks/ohbm2022abstract.md
diff --git a/content/research_report/references.md → content/notebooks/references.md b/content/research_report/references.md → content/notebooks/references.md
diff --git a/content/research_report/results-atlas.md → content/notebooks/results-atlas.md b/content/research_report/results-atlas.md → content/notebooks/results-atlas.md
diff --git a/content/research_report/results-group.md → content/notebooks/results-group.md b/content/research_report/results-group.md → content/notebooks/results-group.md
@@ -23,6 +23,7 @@ from ipywidgets import interactive
 from fmriprep_denoise.visualization import utils
 
 path_root = utils.repo2data_path() / "denoise-metrics"
+
 strategy_order = list(utils.GRID_LOCATION.values())
 group_order = {
     "ds000228": ["adult", "child"],

diff --git a/content/research_report/inputs b/content/research_report/inputs
diff --git a/scripts/make_manuscript_figures.py b/scripts/make_manuscript_figures.py
@@ -25,7 +25,7 @@
 
 
 if __name__ == "__main__":
-    path_root = utils.get_data_root() / "denoise-metrics"
+    path_root = Path(__file__).parents[1] / "inputs" / "denoise-metrics"
     strategy_order = list(utils.GRID_LOCATION.values())
 
     # mean fd