FIX typo and build path

.gitignore

@@ -1,4 +1,5 @@
 # input 
+data/
 inputs/*
 tmp/
 draft/

content/_toc.yml

@@ -6,14 +6,14 @@ root: index.md
 parts:
   - caption: Research report
     chapters:
-    - file: notebooks/results-group.md
-    - file: notebooks/results-atlas.md
-    - file: notebooks/contributions.md
-    - file: notebooks/references.md
+    - file: notebooks/results-group.ipynb
+    - file: notebooks/results-atlas.ipynb
+    - file: notebooks/contributions.ipynb
+    - file: notebooks/references.ipynb
   - caption: Appendices and supplemental material
     chapters:
     - file: notebooks/CITATION.md
-    - file: notebooks/ohbm2022abstract.md
+    - file: notebooks/ohbm2022abstract.ipynb
   - caption: Workflow documentation
     chapters:
     - file: docs/software_implemetation.md

content/notebooks/results-atlas.ipynb

@@ -25,6 +25,7 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "f5ba145f",
    "metadata": {},
@@ -92,11 +93,12 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "87efc58f",
    "metadata": {},
    "source": [
-    "## Each parcelation scheme\n",
+    "## Each parcellation scheme\n",
     "\n",
     "We can also plot them by each parcellation schemes.\n",
     "\n",
@@ -138,6 +140,7 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "5ee2565b",
    "metadata": {},
@@ -182,6 +185,7 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "a806ec0f",
    "metadata": {},
@@ -226,6 +230,7 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "e89658c8",
    "metadata": {},