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Commits on Dec 2, 2024

• Merge remote-tracking branch 'remotes/origin/mpbn' into dev

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  luciansmith

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Commits on Mar 14, 2024

• Update version numbers and changelog.

  luciansmith

  committed
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Commits on May 24, 2023

• Update for release

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  luciansmith

  committed
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Commits on Mar 27, 2022

• feat: copied descriptions of ECM and MDF from the Metabolic Pathway Analysis software

  jonrkarr

  committed
  75e7c30

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• feat: added algorithm concepts for eQuilibrator

  jonrkarr

  committed
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• feat: started new minor version

  jonrkarr

  committed
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Commits on Jan 21, 2022

• feat: Added algorithms and characteristics for attractor methods in mpbn

  jonrkarr

  committed
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Commits on Oct 10, 2021

• docs: formatted changelog

  jonrkarr

  committed
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Commits on Oct 9, 2021

• aggregation functions updated

  matthiaskoenig

  committed
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Commits on Sep 22, 2021

• feat: added term for number of simulation steps per simulation output needed by BioNetGen

  jonrkarr

  committed
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Commits on Aug 29, 2021

• feat: improved performance of algorithm substitution in Python library

  jonrkarr

  committed
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Commits on Aug 23, 2021

• feat: added algorithm parameters for Gillespie and NLEQ2 in RoadRunner

  jonrkarr

  committed
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Commits on Aug 18, 2021

• feat: added RKQS method in XPP, added documentation for XPP methods

  jonrkarr

  committed
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Commits on Aug 12, 2021

• feat: added algorithm parameters for libRoadRunner/CVODE

  jonrkarr

  committed
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• feat: Added algorithm for Resource Balance Analysis

  jonrkarr

  committed
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Commits on Aug 8, 2021

• feat: added Gear-like method implemented by XPP

  jonrkarr

  committed
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Commits on Aug 7, 2021

• feat: added algorithms and parameters for XPP methods

  jonrkarr

  committed
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Commits on Jul 23, 2021

• feat: normalized ids, names, and synonyms of terms; documented these conventions and added tests; incremented version to 2.21; closes #97, closes #99

  jonrkarr

  committed
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Commits on Jul 8, 2021

• feat: generalizing KISAO_0000216 for other types of simulation

  jonrkarr

  committed
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• feat: Added terms for logical simulation and analysis

  jonrkarr

  committed
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Commits on Jun 5, 2021

• Added parameter for adaptive time steps

  jonrkarr

  committed
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Commits on Jun 4, 2021

• incrementing version number, adding to changelog, changing format of changelog to markdown

  jonrkarr

  committed
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