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1. fastq2bam_nextflow_pipeline fastq2bam_nextflow_pipeline Public

   HTML

2. peak_calling_workflow peak_calling_workflow Public

   using nextflow to make a peak calling analysis workflow that does checks for library quality

   Nextflow

3. single_end_chip_seq_pipeline single_end_chip_seq_pipeline Public

   This pipeline is what I created from scratch to analyze single end cut and run data from mus musculus

   Nextflow

4. Updated_SLE_CutRun_pipeline Updated_SLE_CutRun_pipeline Public

   use a directory of pe reads for this pipeline to analyze cut&run data

   Shell 1 1

5. RNA-seq_pipeline_NF RNA-seq_pipeline_NF Public

   The files for running my RNA-seq nextflow pipeline

   HTML 1 1

6. R_shiny_app_rna-seq R_shiny_app_rna-seq Public

   Making an R shiny app that analyzes RNA-seq data and produces visualizations

   R 1