3D-BrainTumorSegmentat4MIA

2024 Spring Medical Image Analysis of UCAS

Environment

conda create --name brats python=3.11
source activate brats

pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu118
pip install h5py -i https://pypi.tuna.tsinghua.edu.cn/simple/
pip install nibabel -i https://pypi.tuna.tsinghua.edu.cn/simple/
pip install tqdm -i https://pypi.tuna.tsinghua.edu.cn/simple/
pip install pyyaml -i https://pypi.tuna.tsinghua.edu.cn/simple/
pip install scipy -i https://pypi.tuna.tsinghua.edu.cn/simple/

Run in BsccCloud

Device = NVIDIA A100-PCIE-40GB

chmod 777 run.sh
dsub -s run.sh # submit the job
djob           # get the job_id
djob -T job_id # cancel the job