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Merge pull request #100 from Rfam/slurm-mempercpu #31

Merge pull request #100 from Rfam/slurm-mempercpu

Merge pull request #100 from Rfam/slurm-mempercpu #31

Workflow file for this run

name: Building Pipeline Containers
on:
push:
branches:
'master'
jobs:
starting-notification:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Intital notification
uses: rtCamp/action-slack-notify@v2
env:
SLACK_MESSAGE: 'Creating new rfam-family-pipeline image in docker hub'
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
MSG_MINIMAL: true
create-docker-image:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: docker login
env:
DOCKER_USER: ${{ secrets.DOCKER_USER }}
DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }}
run: docker login -u $DOCKER_USER -p $DOCKER_PASSWORD
- name: docker build
run: docker build -f Dockerfile -t rfam/family-pipeline .
- name: docker push
run: docker push rfam/family-pipeline
finished-notification:
needs:
- create-docker-image
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Finished notification
uses: rtCamp/action-slack-notify@v2
env:
SLACK_MESSAGE: 'New rfam-family-pipeline image pushed to docker hub'
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
MSG_MINIMAL: true
singularity-conversion:
needs:
- create-docker-image
uses: rfam/rfam-family-pipeline/.github/workflows/singularity.yaml@master
secrets: inherit
finished-singularity:
needs:
- singularity-conversion
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Finished notification
uses: rtCamp/action-slack-notify@v2
env:
SLACK_MESSAGE: 'New singularity image pushed to ghcr'
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
MSG_MINIMAL: true