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May 13, 2024
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2 changes: 1 addition & 1 deletion _config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ url : https://ReproBrainChart.github.io
baseurl :
repository : "ReproBrainChart/ReproBrainChart.github.io"
teaser : # path of fallback teaser image, e.g. "/assets/images/500x300.png"
logo : /assets/RBC%20Primary%20Logo.png # path of logo image to display in the masthead, e.g. "/assets/images/88x88.png"
logo : /assets/images/logos/rbc_primary_logo.png # path of logo image to display in the masthead, e.g. "/assets/images/88x88.png"
masthead_title : # overrides the website title displayed in the masthead, use " " for no title
# breadcrumbs : false # true, false (default)
words_per_minute : 200
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1 change: 1 addition & 0 deletions _data/navigation.yml
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@ main:
url: /docs/imaging/image_functional_QA
- title: Community and Impact
url: /docs/community
hidden: true
sublinks:
- title: "RBC Team"
url: /docs/team
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4 changes: 3 additions & 1 deletion _includes/masthead.html
Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,9 @@
{{ link.title }}
</a>
<div class="dropdown-menu" aria-labelledby="navbarDropdown-{{ link.title }}">
<a class="dropdown-item" href="{{ site.baseurl }}{{ link.url }}">Overview</a>
{% unless link.hidden %}
<a class="dropdown-item" href="{{ site.baseurl }}{{ link.url }}">Overview</a>
{% endunless %}
{% for sublink in link.sublinks %}
<a class="dropdown-item" href="{{ site.baseurl }}{{ sublink.url }}">{{ sublink.title }}</a>
{% endfor %}
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Binary file added assets/images/misc/cubids_workflow.png
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13 changes: 9 additions & 4 deletions docs/imaging/_posts/2020-01-01-image_curation.md
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Expand Up @@ -5,14 +5,19 @@ layout: single

---

[CuBIDS](Reproducible and open science) was used for the curation of each of these datasets. CuBIDS is a sanity preserving workflow that summarizes the heterogeneity in a MRI BIDS dataset, helps prepare MRI datasets for preprocessing, and helps users perform metadata-based quality control on MRI BIDS data.
[CuBIDS](Reproducible and open science) was used for the curation of each of these datasets.
CuBIDS is a sanity preserving workflow that summarizes the heterogeneity in a MRI BIDS dataset, helps prepare MRI datasets for preprocessing, and helps users perform metadata-based quality control on MRI BIDS data.

For each dataset, a CuBIDS summary is created that provides an opportunity to evaluate your data and decide how to handle heterogeneity by grouping the scans on the basis of metadata. You can find the link to each of the CuBIDS summaries for each study below. More information about how to interpret CuBIDS summaries can be found [here](https://cubids.readthedocs.io/en/latest/).
<div style="text-align: center;">
<img src="/assets/images/misc/cubids_workflow.png" width="auto" height="500" />
</div>

For each dataset, a CuBIDS summary is created that provides an opportunity to evaluate your data and decide how to handle heterogeneity by grouping the scans on the basis of metadata.
You can find the link to each of the CuBIDS summaries for each study below.
More information about how to interpret CuBIDS summaries can be found [here](https://cubids.readthedocs.io/en/latest/).

- [HBN](https://github.com/ReproBrainChart/HBN_BIDS/blob/main/study-HBN_desc-CuBIDS_summary.tsv)
- [NKI](https://github.com/ReproBrainChart/NKI_BIDS/blob/main/study-NKI_desc-CuBIDS_summary.tsv)
- [PNC](https://github.com/ReproBrainChart/PNC_BIDS/blob/main/study-PNC_desc-CuBIDS_summary.tsv)
- [CCNP](https://github.com/ReproBrainChart/CCNP_BIDS/blob/main/study-CCNP_desc-CuBIDS_summary.tsv)
- [BHRC](https://github.com/ReproBrainChart/BHRC_BIDS/blob/main/study-BHRC_desc-CuBIDS_summary.tsv)


25 changes: 23 additions & 2 deletions index.md
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Expand Up @@ -5,7 +5,7 @@ author_profile: false
---

<div style="text-align: center;">
<img src="/assets/RBC%20Primary%20Logo.png" width="700" height="300" />
<img src="/assets/images/logos/rbc_primary_logo.png" width="700" height="300" />
</div>

<br/>
Expand Down Expand Up @@ -82,4 +82,25 @@ author_profile: false
<br>
</p>

<iframe src="/assets/dashboard.html" width="100%" height="500px"></iframe>
<div style="text-align: center;">
<h2>Contributing Institutions</h2>
<br/>

<div style="display: flex; justify-content: space-between; width: 90%; margin: auto;">
<img src="/assets/images/logos/university_of_pennsylvania.png" style="height: 150px;" />
<img src="/assets/images/logos/child_mind_institute.png" style="height: 150px;" />
<img src="/assets/images/logos/beijing_normal_university.png" style="height: 150px;" />
<img src="/assets/images/logos/columbia_university.png" style="height: 150px;" />
</div>

</div>

<br/>
<br/>

<div style="text-align: center;">
<h2>Data Downloads</h2>
<br/>

<iframe src="/assets/dashboard.html" width="100%" height="600px"></iframe>
</div>