PRs (or patches) for packages with deprecation warnings, ordered by rev.deps #491
Description
Similar to #489, we have taken the list of packages with deprecation warning identified in #485 and sorted them by (recursive) reverse dependencies. Focussing for now on packages with two or more we get
> N[order(-nrevdep), c(1:2,70)][nrevdep >= 2]
Package Version nrevdep
<char> <char> <int>
1: bayesm 3.1-6 32
2: Rfast2 0.1.5.4 29
3: smooth 4.3.0 24
4: ClusterR 1.3.4 18
5: cellWise 2.5.3 17
6: unmarked 1.5.0 13
7: stochvol 3.2.7 9
8: maotai 0.2.6 8
9: robustHD 0.8.1 8
10: Rdimtools 1.1.2 7
11: sdsfun 0.8.0 7
12: cccp 0.3-2 6
13: robslopes 1.1.3 5
14: simts 0.2.2 5
15: GSE 4.2-1 4
16: comat 0.9.5 4
17: fdasrvf 2.4.0 3
18: updog 2.1.5 3
19: SuperpixelImageSegmentation 1.0.6 2
20: eulerr 7.0.2 2
21: fclust 2.1.2 2
22: phyr 1.1.0 2
23: simStateSpace 1.2.10 2
24: strucchangeRcpp 1.5-4-1.0.0 2
25: wv 0.1.2 2
Package Version nrevdep
> and will collect patches and PRs here.
- bayesm patch emailed 2025-09-22
- Rfast2 PR #28 filed 2025-09-22
- smooth PR #273 filed 2025-09-22
- ClusterR already taken care of in recent upload 1.3.4 dated 2025-09-14
- cellWise patch emailed 2025-09-23; new version 2.5.4 on CRAN 2025-09-23
- unmarked addressed upstream in ecoverseR/unmarked@22143aa on 2025-09-19, version 1.5.1 on CRAN 2025-09-26
- stochvol PR #31 filed 2025-09-23 merged 2025-09-23
- maotai PR #6 filed 2025-09-23, new version 0.2.7 on CRAN 2025-09-24
- robustHD PR #40 filed 2025-09-23, merged 2025-09-29, version 0.8.2 on CRAN 2025-10-02
- Rdimtools taken care of in CRAN version 1.1.3 dated 2025-09-22
- sdsfun taken care of in CRAN version 0.8.1 dated 2025-09-22
- cccp patch emailed 2025-09-23, version 0.3.3 on CRAN 2025-09-27
- robslopes patch emailed 2025-09-23
- simts PR #36 filed 2025-09-23
- GSE patch emailed 2025-09-23
- comat PR #19 files 2025-09-23 merged 2025-09-25, version 0.9.6 on CRAN 2025-09-26
- fdasrvf taken care of upstream in jdtuck/fdasrvf_R@578496f#r166368061 on 2025-09-23, fixed in version on CRAN 2.4.1 dated 2025-09-23
- updog taken care of upstream in dcgerard/updog@cf3a67d#r166368319 on 2025-09-23, version 2.1.6 on CRAN 2025-09-24
- SuperpixelImageSegmentation already taken care of in recent upload 1.0.6 dated 2025-09-15
- eulerr addressed in version 7.0.4 dated 2025-09-23, on CRAN 2025-09-24
- fclust patch emailed 2025-09-24
- phyr PR #93 filed 2025-09-24 merged 2025-09-24
- simStateSpace already fixed upstream in version 1.2.11, issue #1 filed asking for upload, version 1.2.11 on CRAN 2025-09-26
- strucchangeRcpp PR #42 filed 2025-09-24 merged 2025-09-25, version 1.5-4-1.0.1 on CRAN 2025-09-26
- wv PR #18 filed 2025-09-24