Skip to content

Arma version selection: Package with deprecation notes ready for C++14 or later #477

New issue
New issue
Open
Open
Arma version selection: Package with deprecation notes ready for C++14 or later#477
@eddelbuettel

Description

@eddelbuettel
eddelbuettel
opened on Aug 31, 2025

As another example of a simple package that

  • neither depends on or enforces C++11 but simply uses the newest C++ standard available
  • but triggers two very simple deprecation warnings that are easily addressed (see below)

we show the CRAN package RcppSMC.

Example of default compilation before any changes: falls back to 14.6.3 with warning

edd@paul:~/git/rcppsmc(master)$ install.r                                                                                                                                                        
* installing *source* package found in current working directory ...                                                                                                                                               
* installing *source* package ‘RcppSMC’ ...                                                                                                                                                                        ** this is package ‘RcppSMC’ version ‘0.2.8’                                                                                                                                                                       
** using staged installation                                                                                                                                                                                       
** libs                                                                                                                                                                                                            
using C++ compiler: ‘g++ (Ubuntu 14.2.0-19ubuntu2) 14.2.0’                                                                                                                                                         ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg.cpp -o LinReg.o                       
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg_LA.cpp -o LinReg_LA.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg_LA_adapt.cpp -o LinReg_LA_adapt.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c RcppExports.cpp -o RcppExports.o                                                                                                                       
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c blockpfgaussianopt.cpp -o blockpfgaussianopt.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c cSMCexamples.cpp -o cSMCexamples.o           
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c nonLinPMMH.cpp -o nonLinPMMH.o               
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c pflineart.cpp -o pflineart.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-par
entheses -Wno-ignored-attributes -Wno-unused-function    -c pfnonlinbs.cpp -o pfnonlinbs.o
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,                                                                                                    07:24:25 [45/3227]
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from blockpfgaussianopt.cpp:24:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from ../inst/include/LinReg.h:23,
                 from LinReg.cpp:23:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from ../inst/include/LinReg_LA_adapt.h:25,
                 from LinReg_LA_adapt.cpp:25:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from ../inst/include/nonLinPMMH.h:24,
                 from nonLinPMMH.cpp:24:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from ../inst/include/LinReg_LA.h:23,
                 from LinReg_LA.cpp:23:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from pflineart.cpp:24:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/population.h:33,
                 from ../inst/include/sampler.h:37,
                 from ../inst/include/smctc.h:101,
                 from pfnonlinbs.cpp:29:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/RcppSMC.h:18,
                 from RcppExports.cpp:4:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ../inst/include/RcppSMC.h:18,
                 from ../inst/include/cSMCexamples.h:20,
                 from cSMCexamples.cpp:20:
/usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See
 GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
ccache g++ -Wl,-S -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o RcppSMC.so LinReg.o LinReg_LA.o LinReg_LA_adapt.o RcppExports.o blockpfgaussianopt.o cSMCexamples.
o nonLinPMMH.o pflineart.o pfnonlinbs.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/00LOCK-rcppsmc/00new/RcppSMC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading 
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppSMC)
edd@paul:~/git/rcppsmc(master)$

Example after adding -DARMA_USE_CURRENT in src/Makevars{,.win} to PKG_CXXFLAGS: uses 15.0.1 with (simple) deprecation warnings

edd@paul:~/git/rcppsmc(master)$ install.r
* installing *source* package found in current working directory ...
* installing *source* package ‘RcppSMC’ ...
** this is package ‘RcppSMC’ version ‘0.2.8’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 14.2.0-19ubuntu2) 14.2.0’
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg.cpp -o LinReg.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg_LA.cpp -o LinReg_LA.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c LinReg_LA_adapt.cpp -o LinReg_LA_adapt.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c RcppExports.cpp -o RcppExports.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c blockpfgaussianopt.cpp -o blockpfgaussianopt.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c cSMCexamples.cpp -o cSMCexamples.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c nonLinPMMH.cpp -o nonLinPMMH.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c pflineart.cpp -o pflineart.o
ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include'     -fpic  -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function    -c pfnonlinbs.cpp -o pfnonlinbs.o
In file included from ../inst/include/RcppSMC.h:25,
                 from ../inst/include/cSMCexamples.h:20,
                 from cSMCexamples.cpp:20:
../inst/include/conditionalSampler.h: In instantiation of ‘void smc::conditionalSampler<Space, Params>::conditionalResample(ResampleType::Enum) [with Space = cSMCexamples::States; Params = smc::nullParams]’:
../inst/include/conditionalSampler.h:196:13:   required from ‘void smc::conditionalSampler<Space, Params>::Initialise() [with Space = cSMCexamples::States; Params = smc::nullParams]’
  196 |             conditionalResample(rtResampleMode);
      |             ^~~~~~~~~~~~~~~~~~~
cSMCexamples.cpp:105:35:   required from here
  105 |             cSamplerBPF.Initialise();
      |             ~~~~~~~~~~~~~~~~~~~~~~^~
../inst/include/conditionalSampler.h:476:58: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::subview_col<double>, arma::op_rel_gt_post>, arma::op_find>; out_eT = long int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  476 |                     minimalJ += arma::conv_to<long>::from(arma::find(dRSWeightsCumulative.tail(N - minimalJ) > tmpUnifRnd, 1, "first"));
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/local/lib/R/site-library/RcppArmadillo/include/current/armadillo:496,
                 from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /usr/local/lib/R/site-library/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/RcppSMC.h:18:
/usr/local/lib/R/site-library/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:72:1: note: declared here
   72 | conv_to<out_eT>::from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk)
      | ^~~~~~~~~~~~~~~
../inst/include/conditionalSampler.h:551:58: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::subview_col<double>, arma::op_rel_gt_post>, arma::op_find>; out_eT = long int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  551 |                     minimalJ += arma::conv_to<long>::from(arma::find(dRSWeightsCumulative.tail(N - minimalJ) > tmpU, 1, "first"));
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/R/site-library/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:72:1: note: declared here
   72 | conv_to<out_eT>::from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk)
      | ^~~~~~~~~~~~~~~
ccache g++ -Wl,-S -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o RcppSMC.so LinReg.o LinReg_LA.o LinReg_LA_adapt.o RcppExports.o blockpfgaussianopt.o cSMCexamples.o nonLinPMMH.o pflineart.o pfnonlinbs.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/00LOCK-rcppsmc/00new/RcppSMC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppSMC)
edd@paul:~/git/rcppsmc(master)$

We can make the simple two-line changes which, for this package, involve switching to arma::as_scalar() in two places. After that change, no warnings are seen.

```sh edd@paul:~/git/rcppsmc(master)$ ./cleanup edd@paul:~/git/rcppsmc(master)$ install.r * installing *source* package found in current working directory ... * installing *source* package ‘RcppSMC’ ... ** this is package ‘RcppSMC’ version ‘0.2.8’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 14.2.0-19ubuntu2) 14.2.0’ ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c LinReg.cpp -o LinReg.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c LinReg_LA.cpp -o LinReg_LA.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c LinReg_LA_adapt.cpp -o LinReg_LA_adapt.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c RcppExports.cpp -o RcppExports.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c blockpfgaussianopt.cpp -o blockpfgaussianopt.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c cSMCexamples.cpp -o cSMCexamples.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c nonLinPMMH.cpp -o nonLinPMMH.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c pflineart.cpp -o pflineart.o ccache g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -fpic -O3 -Wall -pipe -pedantic -Wno-parentheses -Wno-ignored-attributes -Wno-unused-function -c pfnonlinbs.cpp -o pfnonlinbs.o ccache g++ -Wl,-S -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o RcppSMC.so LinReg.o LinReg_LA.o LinReg_LA_adapt.o RcppExports.o blockpfgaussianopt.o cSMCexamples.o nonLinPMMH.o pflineart.o pfnonlinbs.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /usr/local/lib/R/site-library/00LOCK-rcppsmc/00new/RcppSMC/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppSMC) edd@paul:~/git/rcppsmc(master)$ ```

We also note that the changes have no effect when building under the preceding RcppArmadillo release 14.6.3 as the #define is ignored, and the changed-to Armadillo function has been available for many releases (see e.g. GitHub actions for RcppSMC).

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions