bring issue-2582 branch up-to-date with master#2633
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saramsey merged 63 commits intoissue-2582from Feb 4, 2026
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# Conflicts: # code/ARAX/ARAXQuery/Path_Finder/model/Path.py
Change to forked version of setup action
…) (Ubuntu 24.04 enforces PEP 668 (externally-managed environment), so system-wide pip installs are blocked) #2521
Issue 2598
Should have been updated before but probably some issues during rocky 1.5.0 to 1.6.0 transition #2603
…sing hard-coded value #2603
… hard-coded), but only if it is supported by current Validator #2603
…ing pathfinder query.
…, updated DockerBuild to use correct config domain #2605
Updating to point https://kg2cploverdb.test.transltr.io temporary since it seems to be working while kg2cploverdb.ci.transltr.io is down
Incompatible version of XGBOOST might create failure in test results.
…more than 4 hops paths to get broader result
Expansion of each source and destination 3 hops.
- Clean up display of TRAPI validation caused by new output format - Add link to specific Test Result from ARAX Test History (in Status Summary header) - Minor css updates for Cache Info - Also adding some (disabled) code for future Test summary view
#2608 add AT and KL for NGD
# Conflicts: # code/ARAX/ARAXQuery/ARAX_connect.py # code/ARAX/ARAXQuery/Path_Finder/BidirectionalPathFinder.py # code/ARAX/ARAXQuery/Path_Finder/BreadthFirstSearch.py # code/ARAX/ARAXQuery/Path_Finder/constants.py # code/ARAX/ARAXQuery/Path_Finder/feature_extractor.py # code/ARAX/ARAXQuery/Path_Finder/pathfinder_xgboost_model_kg_2_10_2 # code/ARAX/ARAXQuery/Path_Finder/repo/MLRepo.py # code/ARAX/ARAXQuery/Path_Finder/repo/PloverDBRepo.py
# Conflicts: # code/ARAX/ARAXQuery/ARAX_connect.py
BiolinkHelper packaged to use it in Shepherd-pathfinder
# Conflicts: # code/ARAX/ARAXQuery/ARAX_connect.py # requirements.txt
Use pathfinder package in ARAX
Limit expansion number and increase prune_top_k.
Curie_ngd database build scripts moved to Pathfinder code base.
fixed the issue #2573
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