ASGA 3D Viewer

Open-Source 3D visualization platform is an open-source ASGA module for publishing 3D data of microtubules in mitotic spindles. Key futures:

1. Online access

2. Simple and intuitive to use with implemented UI.

3. Recquired only submiting of your data in special folder without additional coding.

Table of Contents

• Quick start
  • Dependency
  • Usage
• Contributing
• Copyright

Quick startS

You can run the software in an online-version under the Shinyapp.io.

Dependency for local use

R v3.5.3 or newer
Rstudio v1.2 or newer
Java SE 11 (LTS)

R library
- shiny
- shinycssloaders
- shinyWidgets
- shinyBS
- shinyalert
- colourpicker
- readxl
- tidyverse
- rgl
- plotrix

To use 3D viewer simply refere to Shinyapp.io.

To add and publish new data:

app
├── bin
├── wwww
├── demo
│   └── Data_Points_1.RDS
    └── Data_Segments_1.RDS
├── Data
│   └── Publication_Name_1                       # This name will be display on the website page as a name of publication
│       ├── Raw
│       │   └── Full
│       │   │   ├── DataName_#Number_Points.RDS       # This DataName will be display on the website page as a name of dataset
│       │   │   ├── DataName_#Number_Nodes.RDS        # "Number" indicate the order in which data will be display
│       │   │   ├── DataName_#Number_Segments.RDS     # e.g. Hela_#1_Points.RDS; Hela_#1_Nodes.RDS; Hela_#1_Segments.RDS etc.
│       │   └── Small
│       │   │   ├── DataName_#Number_Points.RDS       # This DataName will be display on the website page as a name of dataset
│       │   │   ├── DataName_#Number_Nodes.RDS        # "Number" indicate the order in which data will be display
│       │   │   ├── DataName_#Number_Segments.RDS     # e.g. Hela_#1_Points.RDS; Hela_#1_Nodes.RDS; Hela_#1_Segments.RDS etc.
│       └── Analysis
│       │   ├── Data_Number_AnalysisName.xlsx    # Analysis datasets connected to DataName_Number in Raw folder obtained from ASGA
│       |   ├── ...                              # "Number" is corelated with number of data in Raw folder
│       |   ├── ...                              # e.g. Data_1_LD.xlsx; Data_1_SMT_Ends.xlsx etc.
│   └── Publication_Name_2
│       ├── Raw
│       │   └── Full
│       |       ├── ...
│       │   └── Small
│       |       ├── ...
│       └── Analysis 
│       |   ├── ...
│   └── Publication_Name_3
│       ├── ...
├── globa.R
├── ui.R
├── server.R

Copyright

This project is distributed under the General Public License (GPL) version 3.0 - see the LICENSE.md file for details.