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1. AmpliGone AmpliGone Public

   A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

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2. SARS2seq SARS2seq Public

   SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

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3. ViroConstrictor ViroConstrictor Public

   ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

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4. auriclass auriclass Public

   Quick estimation of Candida auris clade using mash

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5. TrueConsense TrueConsense Public

   TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alig…

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6. juno-assembly juno-assembly Public

   Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics

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