Bokeh test and remove redundant __main__ in visualization/ #450
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weinbe58
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* explicit import * fix testing import * change show to save for tests --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com>
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* explicit import * fix testing import * change show to save for tests --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com>
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* chore: Update pdm.lock (#276) * Braket submit bug (#277) * Fixing enum value for Braket SDK site type. * adding integration test. * removing indent that is cutting defect density generation short (#278) * implemented ability to skip invalid tasks for submission (#279) * implemented ability to skip invalid tasks for submission * Update src/bloqade/submission/braket.py Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> --------- Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * add more tests and enhance cast 1) add tests for scales 2) add tests for bravais 3) to do 2) this commit add cast for tuple type * add some basic docstring to builder methods (#269) * 280 some of bravias lattices lattice spacing are not properly set (#281) * chore: Update pdm.lock (#282) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * tmp * add more testing cases, bumping to 71% * 267 Pages fix (#284) * fixing example + adding examples to CI. * updating example to work with doc build. * fixing bug in adiabatic example. * fix baravias bugs and more test 1) fix bugs on wrong index*elementary vectors 2) bump testing cases on bravias to 96 3) fix bugs on Rectangular when spacing_y dose not specify * update to comply ruff * modify to comply ruff * add test for double parallel * modify to comply black * modify format * try * test pre-compile * pre-commit linter fix * chore: Update pdm.lock (#286) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Fix bugs on bravais, add more tests, and bump up coverages (#285) * add more tests and enhance cast 1) add tests for scales 2) add tests for bravais 3) to do 2) this commit add cast for tuple type * tmp * add more testing cases, bumping to 71% * fix baravias bugs and more test 1) fix bugs on wrong index*elementary vectors 2) bump testing cases on bravias to 96 3) fix bugs on Rectangular when spacing_y dose not specify * update to comply ruff * modify to comply ruff * modify to comply black * modify format * try * test pre-compile * pre-commit linter fix --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * waveform visitors 1) add more testing 2) fix waveform visitors Error types inconsistent bug 3) fix waveform visitors not waveform ast error bug 4) fix GaussianKernel typo * Fix bugs for Waveform visitor and more tests (#287) * add more tests and enhance cast 1) add tests for scales 2) add tests for bravais 3) to do 2) this commit add cast for tuple type * tmp * add more testing cases, bumping to 71% * fix baravias bugs and more test 1) fix bugs on wrong index*elementary vectors 2) bump testing cases on bravias to 96 3) fix bugs on Rectangular when spacing_y dose not specify * update to comply ruff * modify to comply ruff * add test for double parallel * modify to comply black * modify format * try * test pre-compile * pre-commit linter fix * waveform visitors 1) add more testing 2) fix waveform visitors Error types inconsistent bug 3) fix waveform visitors not waveform ast error bug 4) fix GaussianKernel typo --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * add more tests * fix bug in Scalar.canonicalize matching duplicate / missing Negative on rhs/lhs side bug * fix test does not trigger * more cases * Adding integration test with Quera internal API (#289) * Squashed commit of the following: commit cf0587f2a6d21399a3a2e332bea07d0e95e7381b Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 15:15:36 2023 -0400 Removing references to access keys commit c56be286850f215f30caef7c3e935e19b71017da Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 14:23:58 2023 -0400 updating future commit cf4f307422819e7a266e17ea42fb34a0c4e3432c Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 14:22:18 2023 -0400 removing token json. commit a8c8e43530cc84aee653c0e1490fa8e8756442e9 Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:47:46 2023 -0400 Adding mock for internal API submission and fetching task results. commit a7ab7ee9d8768500f153a3771300b5c4ca4e2b64 Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:05:34 2023 -0400 updating annotation. commit 67f01db76a581af44ef886358fdcaf5469d7ec7e Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:05:15 2023 -0400 switching to queue api for fetching task status. commit 8efa19dd0d71b02070b7049ef107da6afe3d6649 Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:04:42 2023 -0400 adding stricter argument initialization on SubmissionBackend. commit d92e275c2420aa23cc8d3c3fb865512b8fcaced7 Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:04:03 2023 -0400 fixing issue with path. commit 0654029ba21086443c12b3a7183a48304a48a20e Author: Phillip Weinberg <weinbe58@gmail.com> Date: Thu Jul 13 13:03:36 2023 -0400 updating api config for integration. * adding vcrpy to dependencies. * updating ci test. * using pytest plugin for `vcrpy` * updating how the requests are recorded * updating retreival cassette to fetch results. * removing tokens. * adding check for if arguments are being used in quera. * fix logistickernel bug and more test 1) fix logistickernel didnt return bug 2) add more tests * fix missing return for RabiRouter * tmp * Refactor submission code to call `task.result()` Braket API to block fetching tasks. (#291) * refactor code to call braket results() API to block report. * removing sorting of tasks to preserve the polling order for tasks. * finished merge master * fix bug in var(Scalar), and remove redundant printing * chore: Update pdm.lock (#293) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Fix bug and more tests on codegen (#295) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * fix bug when slice produce duplicate time points --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * Mocking braket API for submission tests. (#294) * updating braket submission examples and mocking submission api * removing double test. * adding rc file for coverage. * chore: Update pdm.lock (#301) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Fix Sample bugs for eval_decimal and add more tests (#300) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * add checking for default filling of global term --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * making `Append` give correct value for `eval_decimal(duration)`. (#306) * Fix bugs in Piecewise (Linear/Constant)Codegen slice node bug (#305) * chore: Update pdm.lock (#310) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#316) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#319) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Fix bug related to codegen for sample python functions (#307) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Xiu-zhe (Roger) Luo <rogerluo.rl18@gmail.com> * fix mkdocs cannot correctly processing docstrings. (#318) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese * finalize * fix docstrings cannot properly display and parsing issue --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * CI for docs (#320) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese * finalize * fix docstrings cannot properly display and parsing issue * tempo update --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * Update mkdocs.yml * chore: Update pdm.lock (#322) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#324) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Task module Refactor. (#304) * changing low-level task interface and renaming task classes * fixing tests with new Task internal API. * adding missing interface. * updating `init_from_dict` to be a private method. * adding interfaces for braket local simulator. * updating `__init__` for classes to support specific kwargs. * updating interface to reflect intent. * fixing `removing_futures_with_task_id` * dump future to file upon failure. * add `rm .mock_state.txt` in test scripts. * removing `name` from base API. * fixing test/coverage scripts to not error. * fixing typo in `tasks` property * renaming json file. * adding some comments. * fixing annotations for SubmissionBackend * adding tqdm * big refactor of task submodule. * adding type annotations. * fixing annotation. * renaming CloudTaskResults. * fixing Annotation. * fixing tests. * fixing tests. * fixing another test. * updating testing scripts. * removing old api. * fixing wrong method name. * removing potential circular imports. * adding full stack trace to error output. * Fixing bugs in QueueApi + upping test coverage. (#323) * fixing bug in `is_task_stopped` * fixing bug in polling task results endpoint. * untracking all files in * add missing exception. * upping coverage of QuEra API client * removing path to fix integration test. * removing path. * fixing bug in unit test. * Fix cast issue related to #326 (#327) * enhance error msg of cast() and adding matching of abstract type Real() for numpy dtype/pytorch dtype * change Numbers to Real --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * Test coverage for `QuEraBackend` (#328) * changing name of test file, creating test file for `QuEraBackend` class * fixing more tests. * chore: Update pdm.lock (#332) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * [Stage-1] Docs for builder (#331) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese * finalize * fix docstrings cannot properly display and parsing issue * tempo update * add tree and builder docs * update doc * add docs for waveform * finished documenting builder part, and hiding non-user parts * update, fix builder linking, and add some doc for task/ * tmp * change node to Compile instead of codegen * hide parts that are internal from users * add documentations for ir * add more docstrings * start adding prompt for IDE * update --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@31-36-24.wireless.csail.mit.edu> Co-authored-by: Xiu-zhe (Roger) Luo <rogerluo.rl18@gmail.com> * chore: Update pdm.lock (#339) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Enhance docstring IDE experience (#341) * address #244, improving IDE hint experience up to waveform * address #244, improving IDE hint experience up to waveform * update, finished IDE enhance doc for waveform --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * chore: Update pdm.lock (#342) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * fix issues #336, and related examples (#343) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * Test cases for #336 (#344) * fix issues #336, and related examples * add test case for #336 --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * fix filling does not fragmented for each cluster (#347) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * chore: Update pdm.lock (#345) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * fix test * ignore the bad test for now (#348) * ignore the bad test for now * ignore json in root * Example 1: Rabi Oscillations (#163) * Added Rabi example * running linter * Use lower case for variable names * work in progress local emulation * removed Variable import as well as explicit Variable initialization * Added attempt to submit to hardware * now runnable as standalone script, remove HW pipeline due to bug * rename file with more standard convention * Improved interactivity of plot, testing Braket submission capability * remove hardware testing for now, bug found * added hardware submission pipeline * Complete end to end code added with improved Bokeh plot * testing docs integration with whitepaper example * forgot to add actual files in docs * Final version of notebook, more text desirable, can be added later * fix formatting issues * Fixed lint issue with black * Fixed JSON format and refactor to HardwareBatchResult * temp fix on parallel decoder on this branch --------- Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Xiu-zhe (Roger) Luo <rogerluo.rl18@gmail.com> * rm old examples dir (#350) * ignore generated json * clean up json * update emulator test for getbitstring (#351) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * clean up json (#352) * This PR address the issue with printing (#338) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese * finalize * fix docstrings cannot properly display and parsing issue * tempo update * add tree and builder docs * update doc * add docs for waveform * finished documenting builder part, and hiding non-user parts * update, fix builder linking, and add some doc for task/ * tmp * change node to Compile instead of codegen * hide parts that are internal from users * add documentations for ir * add more docstrings * start adding prompt for IDE * compress the printing layout * tmp * auto detect if terminal support unicode * make all default printing pretty print. and move old __repr__ to __str__ with proper changes * finished pretty printing * mod str --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@31-36-24.wireless.csail.mit.edu> * add Bloqade radius interactive indicator (#340) * add Bloqade radius interactive plot * add default values, invisible for radius * remove return type for now * fix hover info display issue and make index directly map to the location index in IR * remove future * fix (x,y) should be the atom pos not curser pos * remove redundant testing * tmp merge from main * change default toggle to true --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * fix printing (#353) * Update pyproject.toml (#358) * chore: Update pdm.lock (#359) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Fix improper printing on ScaledLocations (#361) * add more tests * add more integration tests for codegen * fix bug when ConstantCodeGen hit Negative wvfm node. * tmp * fix bug when slice produce duplicate time points * tmp * tmp * adding fix for Sample interpolation. * tmp * add framework for pretty print testing and fix bugs #297 * fix bug in print with children * remove [html] from .coveragerc and fix bugs in print testing * finished assignment scan tests * fix bug in codegen slice * making `Append` give correct value for `eval_decimal(duration)`. * add more tests for batch_assign * add more testing cases * add more tests and fix bugs related to fn() sampling * fixing `samples` of `Sample` + adding example of using codegen directly. * fix bug in matching of namedpulese * finalize * fix docstrings cannot properly display and parsing issue * tempo update * add tree and builder docs * update doc * add docs for waveform * finished documenting builder part, and hiding non-user parts * update, fix builder linking, and add some doc for task/ * tmp * change node to Compile instead of codegen * hide parts that are internal from users * add documentations for ir * add more docstrings * start adding prompt for IDE * compress the printing layout * tmp * auto detect if terminal support unicode * make all default printing pretty print. and move old __repr__ to __str__ with proper changes * finished pretty printing * mod str * move all printing to base * fix MockPrinter instances got instantiate upon import * fix bug in ScaledLocations not properly printed * fix testing cases --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@31-36-24.wireless.csail.mit.edu> * make docstring hint more explicit for spacial modulation and duplicate waveform (#362) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * Fixing Builder API with multiple Spatial modulations. (#360) * adding termation function for spatial modulation. * changing from terminate field build from appending waveforms to add waveforms. * removing print statement. * update, add testing cases --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * make ListOfLoc and BoundedLattice iterable (#363) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * chore: Update pdm.lock (#365) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * moving emulator module. * removing braket validaiton functionality. (#369) * Task visualization (#366) * chore: Update pdm.lock (#367) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * skipping test that was broken by removing validation implementaiton. (#371) * stach changes. * chore: Update pdm.lock (#374) * chore: Update pdm.lock (#378) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * replace invalid characters for time-stamps in windows. (#379) * replace invalid characters for time-stamps in windows. * fixing ruff issue. * add missing `not` * adding file path to error message for clearity. (#380) * fix print() issues with both Field and SpatialModulation (#377) * fix print() issues with both Field and SpatialModulation * fix lint * fix bug in tree_print isinsance --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * chore: Update pdm.lock (#384) * fix repr does not print tree for waveform (#383) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * removing show from test_task * Fixed non-existent get_cwd (#385) * chore: Update pdm.lock (#386) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#390) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#393) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#394) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#395) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * Full IR visualization and Pulse canonicalize (#376) * finish the field IR for uniform and runtimevec. * update, add canonicalize for pulses * enhance display * comply lint * add visualization for IRs * merge main, and remove plotting from task_test * fixing linter * fixing linter --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Phillip Weinberg <phillipweinberg@Phillips-MacBook-Pro.local> * Added pretty printing for registers/Bravais Lattices (#373) * chore: Update pdm.lock (#398) * Make sure the Rectangular plot follows the same format other Bravais lattices do (#403) * chore: Update pdm.lock (#401) * refactor builder (#364) * refactor builder * keep refactoring * flatten works * cleanup * add a sketch of compile pipeline * support device fn * setup a basic lexer like codegen for builder * waveform and address is working * reexporting objects to `bloqade.ir` and `bloqade` * adding `BoundedBravais` and `ParallelRegister` to imports. * adding `create`/`copy` interface to `BuilderStream` * wrap up whatever I have * docstring. * renambing fields of pulse and sequence * implmenting compiler for pulse sequence. * fix routing. * adding better error messages for not implemented backends. * stashing changes. * adding `static_assign` functionality to scalars * moving from just kargs to storing parameters as Scalar variables. * stash * rename * fixing typo * adding unit tests for * rename class. * moving visitor methods for primatives. * update dev * new compiler for sequence. * removing main2.py * rename modules. * creating visitor for scalar AST, removing `static_assign` implement assign visitor for bloqade AST. * adding canonicalization * reorder imports. * adding match arguments and serializers * adding JSON serialization for Scalar IR. * moving ir compiler into compiler subpackage * creating stream submodule and json submodule. * adding Sample node for builder. * rename `checkpoint` to `coeff` * adding json compiler for waveforms. * adding json encoder for builder. * task sketch. * adding `apply` builder method for sequence objects. * adding explicit check for `Waveform` type. * adding serialization for builder + BloqadeIR * fixing parallelize option for submit/flatten routes. * commenting out old compiler. Adding register compiler * setting up compiler trait. * fixing compiler after refactoring circular imports * fixing imports * adding JSON compiler to builder. * adding compiler traits. * compiler pipeline * adding ir caching option. * updating caching to happen at all levels of bloqade-IR * adding deserialization for bloqade-IR * refactor base backend. * finished draft implementation of serializer/deserializer * Khwu/refactor task (#391) * update, finished hardware tasl * relocate Geometry, isolcate deps * fix bug on Report * update, change status behavior to request call. fix submit order does not shuffle in OrderDict * add repr for Batch * rename submit as resubmit * finished restructure of Task/Batch * update, finished bridge for task<->builder v2 * update, add simple docs * fix namespace conflict in backend * fix bug in RemoteBackend * adding option for caching compiled programs in backends. --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * removing shots from options for backends. * keyword arg for `parent` * missing impl for static assignment on register IR objects. * sketching bug fix. * fix static assign, and visit_register issue * fixing builder compiler to blqoade IR * tm * fixing another bug in builder compiler. * remove redundant print * fix bugs for batches * update, fix bugs for report() * fix bugs in waveform builder * fix bugs with PythonFn waveform default kwargs. fix most of the testing * Khwu/rename (#399) * rename * remove factory * temporary add assert to make test_quera_internal_api fail * fixing bugs in test. * fix bugs in incomplete LocalTask/ LocalBatch. Fix report for LocalBatch * change constrain of scale to Union[Real,str,Scalar]. 2. compile visiting of record node, replace Variable(name) with cast(name) 3. fix tests cases for test_program_visitor. 4. add location method for scale * more testing case * mask coverage for deprecated codes builder_old/ task_old/ * add get_tasks/remove_tasks with status codes * merging on github. (#396) * updating program definition. refactor compiler * going back to old arg parser. * adding error messages for flatten. * refactor builder. * moving builder to builder_old * moving builder2 to builder * moving task to task_old * moving task2 to task * fixing directory * tmp save * commented cache_compiled_program * finished refactor on bridge using schemaCompiler * starting serialization of task * finished serialization * fixing bugs. * fixing braket local emulator. * removing test call * fixing some tests * fixing interface for backends. --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * adding serialization for batch. (#400) * adding serialization for batch. * adding missing object ot serialization. * update, fix bugs in naming _compile_taskdata, recover more tests * add load_batch + doc for tree_depth() * fix bugs in DefaultVariable should be Scalar not real, and member should be Literal instead of Decimal. 2) Fix PythonFn kwargs does not properly processed * fix backend api_config need to pass in with dereferences * Phil/save load batch (#404) * adding serialization for batch. * adding missing object ot serialization. * adding save and load functions for batch objects. * removing dict dispatching. * fix bug in static_assign visit Negative waveform feed in wrong ast * fixing tests * fixing issue with pattern matching with `Poly` * Khwu/testing v3 (#408) * test +6 * 1) add checking for batch_assign lengths. 2) more tests recover, * update, add trait BatchAssignable * test +1, fix bug in load_batch * adding fix to parser to account for `Sample` builder node. * fix test case for mod/ DefaultVariable * fix covergerc wrong format * ocmply ruff * fixing last tests. --------- CI is now passing for builder refactor Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * Khwu/testing v4 (#409) * test +6 * 1) add checking for batch_assign lengths. 2) more tests recover, * update, add trait BatchAssignable * test +1, fix bug in load_batch * adding fix to parser to account for `Sample` builder node. * fix test case for mod/ DefaultVariable * fix covergerc wrong format * ocmply ruff * add more tests * add missing __init__.py for builder/compile to comply with doc builder --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> --------- Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <kaihsinwu@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * new design for lowering. * chore: Update pdm.lock (#412) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * adding checks for scalar in assign * Force plots to always be 80x24 (#415) Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * adding tests. * add shot info (total_nshots) for Batch and (nshots) for Task (#418) * add shot info (total_nshots) for Batch and (nshots) for Task * remove redundant print() in codegen. Add more info in repr/get_metric for batch. --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * Phil/adding constants module (#419) * adding c6 * adding test * stash * adding sorting to counts. (#420) * Recover docs for builder and IDE hint (#422) * update, docs * recover doc for builder coupling, field * finished waveform doc * update, finished recover IDE hint and docs for builder * remove ParallelizeFlatten --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * Flatten bug invalid check (#426) * fixing issue with check for trying to flatten vector arguments. * adding test. * run black. * fixing ruff * adding another test for flattened error. * run black * completing implementation for rabi * fix negative scalar misleading ppring (#430) * fix negative scalar misleading ppring * update test --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * fixing bug. (#436) * Add unicode autodetection, fallback to period as substitute for unicode dot (#431) Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * Khwu/vis report#417 (#432) * tmp * finish visualize report * update, finished metadata * finished visual with hovertools and indicators * add box_zoom * fix bug in rydberg density * fix metadata + add panx/zoomz options for plots. * adding method to get a list of parameters from metadata. * fixing annotation. * x axis label 45 deg * add name for report * update --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * Khwu/vis geo#433 (#443) * try logo * add register * add heatmap for rydberg density * add heatmap, fix bugs for Decimal/float * remove bar chart for ryd density --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * chore: Update pdm.lock (#445) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * chore: Update pdm.lock (#446) * refactoring modules adding visitor for lowerfrom from emulator program to AnalogGate. * adding duration to emulator program. * adding features for waveforns, * remove pydantic * changing order of arguments. * debugging lowering from bloqade-IR to emulator IR. * changing order of args. * adding helper functions for calculating matrix elements. * chore: Update pdm.lock (#448) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * added unit tests for lattice terminal pretty printing (#402) * added unit tests for lattice terminal pretty printing * revised unit tests with main merged in, fixed 80 x 24 dimensions * us os instead of pathlib --------- Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * removing validation for reserved tokens (#452) * removing validation for reserved tokens * skipping test. * add natoms from builder (#451) * add natoms from builder * rename natom -> n_atoms --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * Bokeh test and remove redundant __main__ in visualization/ (#450) * explicit import * fix testing import * change show to save for tests --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * add terminal color support for Variable (#449) * add color support * fix test --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * updating pdm lock (#458) * bug: swapped order in constructor. (#465) * bug: swapped order in constructor. * adding integration test. * re-exporting objects into module just under bloqade. (#460) * add icons for bloqade and QuEra (#462) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * updating names of parameters for clarity * adding matrix element calculation methods to space and adding AtomType objects. * adding space atom types. * stash for later * chore: Update pdm.lock (#468) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * enhance batch behavior (#467) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * renaming modules * fixing implementation for two and three level system. * renaming function (#471) * 441 reorganize the program lowering pass (#444) * updating to absolute paths. * linter * renaming modules. * removing compiler, not needed * adding parallel_decoder as return value from schema generator. * adding sketch of compiler in program. * removing TaskData like objects. * adding compiler objects. * adding parser. * refactor compiler. * fixing unit tests. * adding check to make sure the serializer saves tasks properly. * add newline * adding builder as parent node to Program. * renaming default variable to assigned variable for tracing. * changing visitors. * renaming to * removing compiler package * stash, needs debugging * debugging tests * removing credentials from submiss API. * fixing issue with deserialization. * refactor parser. * stashing * fixing builder code. * adding braket route * adding quera submission * adding exceptions for non-implemented content. * adding quera options. * renaming `DumbMockBackend` to just `MockBackend` * adding back kai's change. * fixing parser * fixing some minor bugs. * removing lower module. * fixing configs. * fixing some traits. * stash changes. * fixing some tests. * fixing all unit tests. * bug fix for parser. * adding init for docs. * adding multiprocessing back to the local jobs. (#421) * adding multiprocessing back to the local jobs. * adding `self` as return value for `run` in order to capture results from the process. * changing from `multiprocessing` to `concurrent.futures` for simpler API. * adding multiprocessing options to emulator routine. * Removing old modules. (#474) * Temporary state file for tests (#476) * replace submit with compile * add temporary file for integration test using state_file. * Removing prints. (#477) * updating docstring. * stashing changes * more stashing * chore: Update pdm.lock (#482) Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> * adding fix for missing data in report. (#478) * adding fix for missing data * removing reference to `task_number` in report outputs and just returning a list of values for each task in the data frame. * adding filter flag for imperfect sotring. * fixing test. * better information for report (#481) Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * Khwu/batch status (#485) * fix behavior of task/batch to better reflect the task status * add check for task_id existing * updating filters to use generic implementations. * adding kwarg required for initialization. * update, add immediate fetch after submit * update fetch behavior when task_id is not exist * update fix bugs * remove accidentally pull when repr metric * update, make statuscode *args * update test * add partial to return result for quera task --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> * Visitor for Location module. (#483) * adding base class for location visitor * create visitor for serializer. * assing location visitor for static assign. * moving compiler pass for assigning record values to outside of schema generating pass. * rename static assign to assign, * fixing missing rename * adding assigned `RunTimeVector` node. (#484) * adding assigned `RunTimeVector` node. * fixing names in serialization for `AssignedVariable` * update Serialization * adding assignment for `RunTimeVector` * adding node to Schema generator. * adding test. * debugging tests. * bump for CI. * fix casting param * fixing bug for multiple pass. * adding test for potential bug. * fixing tests. * update, remove bitstrings from hover, fix bug in counts for report (#487) * update, remove bitstrings from hover, fix bug in counts for report * update, remove bitststrings from hovers * update remove redundant breakline from bitstrings * remove redundanat print, and fix cis --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Phillip Weinberg <weinbe58@gmail.com> * renaming submodule. * Khwu/docs alpha (#489) * add more docs for builder and Routine * enhance docstrings for users, including batch, backend, routines --------- Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> * renameing modules. * adding sample state * adding routine for emulator. * adding init. * modify IR to be easily cachable to cache operators across multiple tasks. * basic cases work for compilation * removing assignment as it should happen in compiler passes. * making code compaptible with different compilatoin passes. * making hash include class name. * using combination of operator data and geometry for caching results. * adding comments. * renaming `Geometry` to `Register` * renaming methods. * adding annotations. * adding `BloqadeTask` * adding bloqade emulator execution * integration into builder * adding `project_hyperfine` options explicitly * fixing bugs. * switching to interaction picture to speed up calculation. * fixing options. * adding some tests. * more tests. * more tests. * rename positions to sites. * refactor modules. * fixing bug in report * fixing hash and fixing imports. * integration. * fixing bug with interaction picture. * adding time-selection to AnalogGate.apply * adding equality back for register. * fixing bug with field position -> sites. * renaming `geometry` to `register` * renaming fields to be more consistent with BloqadeIR. * renaming visitor methods. * fixing transformation out of interaction picture. * fixing sign. * fixing names in codegen. * adding integration test. * renaming test. * fixing name of test. * fixing names in hamiltonian codegen. * adding integration test with phase. * adding builder hint. * adding docs. * fixing bug, updating docs. * reusing array. * fixing potential bug with subspace matrix element calculation. * fixing typo * moving compiled waveform into emulator IR. * fixing tests. --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: John Long <johnzl@protonmail.ch> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MBP.hsd1.ma.comcast.net> Co-authored-by: Xiu-zhe (Roger) Luo <rogerluo.rl18@gmail.com> Co-authored-by: Roger-luo <Roger-luo@users.noreply.github.com> Co-authored-by: Kai-Hsin Wu <khwu@KHWus-MacBook-Pro.local> Co-authored-by: Kai-Hsin Wu <kaihsinwu@gmail.com> Co-authored-by: Kai-Hsin Wu <khwu@31-36-24.wireless.csail.mit.edu> Co-authored-by: Phillip Weinberg <phillipweinberg@Phillips-MacBook-Pro.local>
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This PR address part of #440 and #439