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Qiqi-Xie
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A python extension for quick access to bigWig and bigBed files
Bayesian model for RNA velocity estimation of periodic manifolds
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
A graph-transformer for whole slide image classification
LIANA+: an all-in-one framework for cell-cell communication
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
A package to help convert different single-cell data formats to each other
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…
A modular graph-based Retrieval-Augmented Generation (RAG) system
R package implementation of Milo for testing for differential abundance in KNN graphs
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Non-parametric density inference for single-cell analysis.
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
Spatial Transcriptomics Capture Location Deconvolution
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
🧑🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…
Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。https://git.io/linux
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Sample code for Bash for Beginners course
10 Weeks, 20 Lessons, Data Science for All!
