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Commits on Oct 16, 2025

• Merge branch 'main' of github.com:QI2lab/SPIM_model

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• Fixed circular import from analysic tools

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• Changed setup to find model_tools directory instead of src

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Commits on Sep 13, 2025

• Fixed other string errors and import errors

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• Fixed string errors when importing package

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• added tools for running image contrast measurements including quadratic fit functions.

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Commits on Aug 30, 2024

• Update README.md

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• New scripts for producing figures, added a model_example script

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Commits on Aug 28, 2024

• included in previous commit

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• Added function to obtain zernike coefficients from polynomial fit results. Added scripts to generated light sheets for specified remote focus optimization positions.

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Commits on Aug 21, 2024

• Modified remote focus model to raytrace enough rays for propagation, created new scripts for figures.

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Commits on Aug 12, 2024

• Update README.md

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Commits on Jul 22, 2024

• Updated model_exaple.ipynb

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Commits on Jul 20, 2024

• remove pycromanager

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• removed pycromanager imports

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Commits on Jul 19, 2024

• updated to include pycromanger updates

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Commits on Jul 17, 2024

• verified remote focus model scripts run

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• Modified to reflect up to date SCIPY functions and verified installation of env. works. Cleaned up the rays to field plotting.

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Commits on Jul 16, 2024

• added zenodo doi

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• Added localize_psf to setup.py and setup filter in local script

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• Initial commit, copied necessary scripts from private sjs_raytracing

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• Initial commit

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