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@QI2lab

QI2 lab

Quantitative Imaging and Inference Lab

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  1. mcSIM mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    Python 62 15

  2. opm-v2 opm-v2 Public

    GUI and code for controlling an oblique plane microscope with projection imaging, sensorless adaptive optics, and integrated microfluidics.

    Python 1 1

  3. I2K2022-SIM I2K2022-SIM Public

    I2K 2022 mcSIM tutorial

    Jupyter Notebook 6

  4. opm-processing-v2 opm-processing-v2 Public

    Code for fast deconvolution, deskewing, registration, and fusion of OPM/diSPIM/LLSM data.

    Python 5

  5. localize-psf localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    Python 6 2

  6. merfish3d-analysis merfish3d-analysis Public

    GPU accelerated post-processing for 2D or 3D iterative barcoded FISH data.

    Python 7 3

Repositories

Showing 10 of 34 repositories
  • SPIM_model Public
    QI2lab/SPIM_model’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Sep 13, 2025
  • merfish3d-analysis Public

    GPU accelerated post-processing for 2D or 3D iterative barcoded FISH data.

    QI2lab/merfish3d-analysis’s past year of commit activity
    Python 7 BSD-3-Clause 3 6 3 Updated Sep 12, 2025
  • opm-processing-v2 Public

    Code for fast deconvolution, deskewing, registration, and fusion of OPM/diSPIM/LLSM data.

    QI2lab/opm-processing-v2’s past year of commit activity
    Python 5 BSD-3-Clause 0 0 2 Updated Sep 8, 2025
  • opm-v2 Public

    GUI and code for controlling an oblique plane microscope with projection imaging, sensorless adaptive optics, and integrated microfluidics.

    QI2lab/opm-v2’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 3 Updated Sep 8, 2025
  • mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    QI2lab/mcSIM’s past year of commit activity
    Python 62 GPL-3.0 15 0 2 Updated Sep 3, 2025
  • warpfield Public Forked from danionella/warpfield

    GPU-based 3D non-rigid volumetric registration

    QI2lab/warpfield’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Sep 3, 2025
  • 2025-CBP-SummerSchool Public

    2025 ASU Center for Biological Physics Summer School

    QI2lab/2025-CBP-SummerSchool’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 13, 2025
  • deeds-registration Public Forked from AlexCoul/deeds-registration

    Python wrapper around DEEDS - efficient algorithm for 3D discrete deformable image registration, reaching the highest accuracy in several benchmarks

    QI2lab/deeds-registration’s past year of commit activity
    C 0 MIT 4 0 0 Updated Jul 24, 2025
  • dpc-3d Public
    QI2lab/dpc-3d’s past year of commit activity
    Python 0 0 0 1 Updated Jul 14, 2025
  • navigate Public Forked from TheDeanLab/navigate

    navigate - open source light-sheet microscope controls

    QI2lab/navigate’s past year of commit activity
    Python 0 12 0 0 Updated Jul 11, 2025
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