feat(perf): better search performance by avoiding allocations by PyDataBlog · Pull Request #40 · PyDataBlog/simstring_rs

PyDataBlog · 2025-08-06T17:18:01Z

name: Pull Request
about: Propose a change to the project
title: "feat(perf): Initial optimization round for faster searching"
labels: ""
assignees: ""

Description

Initial refactor aimed at reducing and/or eliminating unnecessary allocations during searches.

Fixes (#35)

Type of change

feat(perf): Initial optimization round for faster searching.

How Has This Been Tested?

Added test for python integration

Checklist:

My code follows the style guidelines of this project
I have performed a self-review of my own code
I have commented my code, particularly in hard-to-understand areas
I have made corresponding changes to the documentation
My changes generate no new warnings
I have added tests that prove my fix is effective or that my feature works
New and existing unit tests pass locally with my changes
Any dependent changes have been merged and published in downstream modules

… more search improvements

codecov-commenter · 2025-08-06T17:20:46Z

Codecov Report

❌ Patch coverage is 96.94656% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 40.06%. Comparing base (5e3efe2) to head (78e34aa).
⚠️ Report is 3 commits behind head on main.

Files with missing lines	Patch %	Lines
src/search.rs	95.00%	2 Missing ⚠️
src/extractors/character_ngrams.rs	94.73%	1 Missing ⚠️
src/python/mod.rs	92.30%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##             main      #40       +/-   ##
===========================================
- Coverage   60.75%   40.06%   -20.69%     
===========================================
  Files          11       14        +3     
  Lines         372     2291     +1919     
===========================================
+ Hits          226      918      +692     
- Misses        146     1373     +1227

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

github-actions · 2025-08-06T17:28:55Z

Benchmark Results

This file is automatically generated by the CI. Do not edit manually.

System Specifications

OS: Linux 6.11.0-1018-azure
Architecture: x86_64
CPU Model: x86_64
CPU Cores: 4 logical, 2 physical
Memory: 15.62 GB

Insert Benchmark

language	backend	ngram_size	mean	stddev	iterations
julia	SimString.jl	2	76.9386	19.6718	100
julia	SimString.jl	3	90.8907	22.3992	100
julia	SimString.jl	4	107.732	29.2409	100
python	simstring-fast	2	85.3774	2.27358	100
python	simstring-fast	3	98.7552	2.37727	100
python	simstring-fast	4	108.241	2.60492	100
python	simstring-rust (python bindings)	2	35.9795	0.405548	100
python	simstring-rust (python bindings)	3	42.291	0.33357	100
python	simstring-rust (python bindings)	4	43.2698	0.367686	100
ruby	simstring-pure	2	631.042	7.7718	32
ruby	simstring-pure	3	687.796	6.2886	30
ruby	simstring-pure	4	785.584	11.1856	26
rust	simstring-rust (native)	2	33.3637	0.381579	100
rust	simstring-rust (native)	3	38.4524	0.868538	100
rust	simstring-rust (native)	4	39.7485	0.370196	100

Search Benchmark

language	backend	ngram_size	threshold	mean	stddev	iterations
julia	SimString.jl	2	0.6	345.144	2.99869	58
julia	SimString.jl	2	0.7	218.76	2.28454	92
julia	SimString.jl	2	0.8	120.483	1.90664	100
julia	SimString.jl	3	0.6	282.851	2.68809	71
julia	SimString.jl	3	0.7	187.53	3.04389	100
julia	SimString.jl	3	0.8	110.457	2.24817	100
julia	SimString.jl	4	0.6	260.031	3.11879	77
julia	SimString.jl	4	0.7	177.2	2.26256	100
julia	SimString.jl	4	0.8	104.996	2.3391	100
python	simstring-fast	2	0.6	99.5301	1.83743	100
python	simstring-fast	2	0.7	45.5961	0.219347	100
python	simstring-fast	2	0.8	19.8198	0.078477	100
python	simstring-fast	2	0.9	8.68455	0.0711747	100
python	simstring-fast	3	0.6	74.9283	3.09744	100
python	simstring-fast	3	0.7	33.7705	0.23569	100
python	simstring-fast	3	0.8	16.7784	0.0608738	100
python	simstring-fast	3	0.9	8.85469	0.0617427	100
python	simstring-fast	4	0.6	62.987	4.13839	100
python	simstring-fast	4	0.7	31.3399	0.608233	100
python	simstring-fast	4	0.8	16.3525	0.125039	100
python	simstring-fast	4	0.9	9.15024	0.0397023	100
python	simstring-rust (python bindings)	2	0.6	14.3291	0.921432	100
python	simstring-rust (python bindings)	2	0.7	9.01846	0.499885	100
python	simstring-rust (python bindings)	2	0.8	5.40684	0.322296	100
python	simstring-rust (python bindings)	2	0.9	3.46745	0.182385	100
python	simstring-rust (python bindings)	3	0.6	12.4499	0.762032	100
python	simstring-rust (python bindings)	3	0.7	8.43156	0.821714	100
python	simstring-rust (python bindings)	3	0.8	5.09983	0.16104	100
python	simstring-rust (python bindings)	3	0.9	3.53079	0.0855533	100
python	simstring-rust (python bindings)	4	0.6	12.2162	0.679269	100
python	simstring-rust (python bindings)	4	0.7	8.69231	0.595878	100
python	simstring-rust (python bindings)	4	0.8	5.5803	0.118498	100
python	simstring-rust (python bindings)	4	0.9	3.83781	0.109046	100
ruby	simstring-pure	2	0.6	790.537	8.83367	26
ruby	simstring-pure	2	0.7	385.36	2.08661	52
ruby	simstring-pure	2	0.8	177.719	2.9818	100
ruby	simstring-pure	3	0.6	619.04	4.51561	33
ruby	simstring-pure	3	0.7	306.536	1.61813	66
ruby	simstring-pure	3	0.8	157.667	1.35844	100
ruby	simstring-pure	4	0.6	560.841	3.20314	36
ruby	simstring-pure	4	0.7	302.575	1.1942	67
ruby	simstring-pure	4	0.8	162.244	1.12586	100
rust	simstring-rust (native)	2	0.6	13.3813	0.182399	100
rust	simstring-rust (native)	2	0.7	8.29851	0.062837	100
rust	simstring-rust (native)	2	0.8	4.91053	0.119579	100
rust	simstring-rust (native)	2	0.9	2.91681	0.0546593	100
rust	simstring-rust (native)	3	0.6	12.1003	0.245566	100
rust	simstring-rust (native)	3	0.7	8.06063	0.196348	100
rust	simstring-rust (native)	3	0.8	4.88857	0.0506469	100
rust	simstring-rust (native)	3	0.9	3.04975	0.0481216	100
rust	simstring-rust (native)	4	0.6	12.1171	0.332807	100
rust	simstring-rust (native)	4	0.7	8.71218	0.0927642	100
rust	simstring-rust (native)	4	0.8	5.46905	0.102869	100
rust	simstring-rust (native)	4	0.9	3.29832	0.0923071	100

github-actions · 2025-08-06T17:34:00Z

Benchmark Results

This file is automatically generated by the CI. Do not edit manually.

System Specifications

OS: Linux 6.11.0-1018-azure
Architecture: x86_64
CPU Model: x86_64
CPU Cores: 4 logical, 2 physical
Memory: 15.62 GB

Insert Benchmark

language	backend	ngram_size	mean	stddev	iterations
julia	SimString.jl	2	77.6692	19.8978	100
julia	SimString.jl	3	89.4087	20.3067	100
julia	SimString.jl	4	108.858	25.2067	100
python	simstring-fast	2	87.9563	3.58368	100
python	simstring-fast	3	102.117	2.95784	100
python	simstring-fast	4	111.084	3.70894	100
python	simstring-rust (python bindings)	2	36.2493	0.361336	100
python	simstring-rust (python bindings)	3	42.6312	0.717482	100
python	simstring-rust (python bindings)	4	43.7351	0.758281	100
ruby	simstring-pure	2	636.657	9.33667	32
ruby	simstring-pure	3	697.446	10.4397	29
ruby	simstring-pure	4	798.557	14.5165	26
rust	simstring-rust (native)	2	34.4462	0.498537	100
rust	simstring-rust (native)	3	39.5485	0.499606	100
rust	simstring-rust (native)	4	40.3085	0.380062	100

Search Benchmark

language	backend	ngram_size	threshold	mean	stddev	iterations
julia	SimString.jl	2	0.6	367.945	4.01445	55
julia	SimString.jl	2	0.7	235.506	3.65399	85
julia	SimString.jl	2	0.8	129.644	2.27017	100
julia	SimString.jl	3	0.6	303.701	4.08859	66
julia	SimString.jl	3	0.7	201.44	3.86126	100
julia	SimString.jl	3	0.8	117.837	2.91487	100
julia	SimString.jl	4	0.6	277.094	4.29347	73
julia	SimString.jl	4	0.7	188.432	2.10071	100
julia	SimString.jl	4	0.8	112.946	2.58249	100
python	simstring-fast	2	0.6	103.434	2.32375	100
python	simstring-fast	2	0.7	46.8205	0.551328	100
python	simstring-fast	2	0.8	20.4447	0.328228	100
python	simstring-fast	2	0.9	8.88377	0.151702	100
python	simstring-fast	3	0.6	78.6086	3.52294	100
python	simstring-fast	3	0.7	34.3366	0.610995	100
python	simstring-fast	3	0.8	17.0185	0.246782	100
python	simstring-fast	3	0.9	8.94838	0.0377482	100
python	simstring-fast	4	0.6	66.6517	4.70636	100
python	simstring-fast	4	0.7	32.7031	1.41806	100
python	simstring-fast	4	0.8	16.4529	0.301787	100
python	simstring-fast	4	0.9	9.17704	0.0362932	100
python	simstring-rust (python bindings)	2	0.6	14.1127	1.02636	100
python	simstring-rust (python bindings)	2	0.7	8.93835	0.494226	100
python	simstring-rust (python bindings)	2	0.8	5.25181	0.157636	100
python	simstring-rust (python bindings)	2	0.9	3.35812	0.0853041	100
python	simstring-rust (python bindings)	3	0.6	12.5344	0.680733	100
python	simstring-rust (python bindings)	3	0.7	8.26936	0.429493	100
python	simstring-rust (python bindings)	3	0.8	5.31358	0.604958	100
python	simstring-rust (python bindings)	3	0.9	3.61135	0.349833	100
python	simstring-rust (python bindings)	4	0.6	12.1821	0.851323	100
python	simstring-rust (python bindings)	4	0.7	8.77353	0.651165	100
python	simstring-rust (python bindings)	4	0.8	5.6041	0.222874	100
python	simstring-rust (python bindings)	4	0.9	3.78458	0.124901	100
ruby	simstring-pure	2	0.6	790.417	8.92151	26
ruby	simstring-pure	2	0.7	391.26	5.73673	52
ruby	simstring-pure	2	0.8	179.054	1.8228	100
ruby	simstring-pure	3	0.6	622.056	4.8602	33
ruby	simstring-pure	3	0.7	308.686	3.4503	65
ruby	simstring-pure	3	0.8	158.537	1.70569	100
ruby	simstring-pure	4	0.6	570.493	13.3149	36
ruby	simstring-pure	4	0.7	304.098	2.54006	66
ruby	simstring-pure	4	0.8	163.295	2.96283	100
rust	simstring-rust (native)	2	0.6	13.4511	0.107194	100
rust	simstring-rust (native)	2	0.7	8.38545	0.0806073	100
rust	simstring-rust (native)	2	0.8	4.90486	0.0564788	100
rust	simstring-rust (native)	2	0.9	2.87002	0.128932	100
rust	simstring-rust (native)	3	0.6	12.185	0.347008	100
rust	simstring-rust (native)	3	0.7	8.0225	0.0928017	100
rust	simstring-rust (native)	3	0.8	4.934	0.0597409	100
rust	simstring-rust (native)	3	0.9	3.06689	0.0445847	100
rust	simstring-rust (native)	4	0.6	12.1925	0.25438	100
rust	simstring-rust (native)	4	0.7	8.79447	0.243556	100
rust	simstring-rust (native)	4	0.8	5.42909	0.0696613	100
rust	simstring-rust (native)	4	0.9	3.26807	0.116604	100

github-actions · 2025-08-06T20:03:23Z

Benchmark Results

This file is automatically generated by the CI. Do not edit manually.

System Specifications

OS: Linux 6.11.0-1018-azure
Architecture: x86_64
CPU Model: x86_64
CPU Cores: 4 logical, 2 physical
Memory: 15.62 GB

Insert Benchmark

language	backend	ngram_size	mean	stddev	iterations
julia	SimString.jl	2	84.1444	20.2116	100
julia	SimString.jl	3	95.6942	22.0706	100
julia	SimString.jl	4	113.203	25.4671	100
python	simstring-fast	2	91.3737	4.18052	100
python	simstring-fast	3	105.872	4.57075	100
python	simstring-fast	4	115.799	4.90834	100
python	simstring-rust (python bindings)	2	36.6298	1.08402	100
python	simstring-rust (python bindings)	3	43.5112	1.57261	100
python	simstring-rust (python bindings)	4	48.0112	3.21654	100
ruby	simstring-pure	2	675.001	19.1384	30
ruby	simstring-pure	3	768.693	19.1382	27
ruby	simstring-pure	4	889.909	32.9884	23
rust	simstring-rust (native)	2	33.5697	0.472784	100
rust	simstring-rust (native)	3	40.0742	1.46576	100
rust	simstring-rust (native)	4	41.8456	1.47559	100

Search Benchmark

language	backend	ngram_size	threshold	mean	stddev	iterations
julia	SimString.jl	2	0.6	367.562	10.3848	55
julia	SimString.jl	2	0.7	233.235	7.93964	86
julia	SimString.jl	2	0.8	127.981	3.86399	100
julia	SimString.jl	3	0.6	301.322	6.05041	67
julia	SimString.jl	3	0.7	196.998	5.88643	100
julia	SimString.jl	3	0.8	115.151	9.12925	100
julia	SimString.jl	4	0.6	274.727	6.57464	73
julia	SimString.jl	4	0.7	188.58	5.98388	100
julia	SimString.jl	4	0.8	115.782	4.30659	100
python	simstring-fast	2	0.6	112.469	5.65682	100
python	simstring-fast	2	0.7	51.09	2.30284	100
python	simstring-fast	2	0.8	22.1778	1.40934	100
python	simstring-fast	2	0.9	9.12684	0.435397	100
python	simstring-fast	3	0.6	87.0382	5.91793	100
python	simstring-fast	3	0.7	38.9809	2.36743	100
python	simstring-fast	3	0.8	18.725	1.26962	100
python	simstring-fast	3	0.9	9.45345	0.537891	100
python	simstring-fast	4	0.6	70.6974	4.41439	100
python	simstring-fast	4	0.7	35.1083	2.23206	100
python	simstring-fast	4	0.8	17.5233	1.31403	100
python	simstring-fast	4	0.9	9.06614	0.205041	100
python	simstring-rust (python bindings)	2	0.6	14.5597	1.04092	100
python	simstring-rust (python bindings)	2	0.7	9.27208	0.410339	100
python	simstring-rust (python bindings)	2	0.8	5.67725	0.40152	100
python	simstring-rust (python bindings)	2	0.9	3.52841	0.101915	100
python	simstring-rust (python bindings)	3	0.6	12.8059	0.998621	100
python	simstring-rust (python bindings)	3	0.7	8.6409	0.495265	100
python	simstring-rust (python bindings)	3	0.8	5.28918	0.294188	100
python	simstring-rust (python bindings)	3	0.9	3.57758	0.087587	100
python	simstring-rust (python bindings)	4	0.6	12.6011	0.945537	100
python	simstring-rust (python bindings)	4	0.7	8.87425	0.435921	100
python	simstring-rust (python bindings)	4	0.8	5.8715	0.559856	100
python	simstring-rust (python bindings)	4	0.9	3.88509	0.108448	100
ruby	simstring-pure	2	0.6	827.675	9.44302	25
ruby	simstring-pure	2	0.7	406.303	6.80401	50
ruby	simstring-pure	2	0.8	186.584	4.11284	100
ruby	simstring-pure	3	0.6	656.308	11.1972	31
ruby	simstring-pure	3	0.7	323.624	8.45797	62
ruby	simstring-pure	3	0.8	165.939	3.85368	100
ruby	simstring-pure	4	0.6	585.914	11.2453	35
ruby	simstring-pure	4	0.7	316.365	8.32168	64
ruby	simstring-pure	4	0.8	171.673	4.7918	100
rust	simstring-rust (native)	2	0.6	13.6769	0.481645	100
rust	simstring-rust (native)	2	0.7	8.4575	0.361116	100
rust	simstring-rust (native)	2	0.8	5.00815	0.336188	100
rust	simstring-rust (native)	2	0.9	2.9535	0.0723608	100
rust	simstring-rust (native)	3	0.6	12.2328	0.25625	100
rust	simstring-rust (native)	3	0.7	8.13088	0.193527	100
rust	simstring-rust (native)	3	0.8	4.98056	0.171614	100
rust	simstring-rust (native)	3	0.9	3.06545	0.119795	100
rust	simstring-rust (native)	4	0.6	12.5205	0.597156	100
rust	simstring-rust (native)	4	0.7	8.87088	0.234975	100
rust	simstring-rust (native)	4	0.8	5.38636	0.062473	100
rust	simstring-rust (native)	4	0.9	3.33616	0.0663829	100

github-actions · 2025-08-06T20:27:45Z

Benchmark Results

This file is automatically generated by the CI. Do not edit manually.

System Specifications

OS: Linux 6.11.0-1018-azure
Architecture: x86_64
CPU Model: x86_64
CPU Cores: 4 logical, 2 physical
Memory: 15.62 GB

Insert Benchmark

language	backend	ngram_size	mean	stddev	iterations
julia	SimString.jl	2	75.1315	19.5156	100
julia	SimString.jl	3	89.2516	23.3662	100
julia	SimString.jl	4	105.6	27.2153	100
python	simstring-fast	2	85.2067	2.13548	100
python	simstring-fast	3	99.3145	5.77524	100
python	simstring-fast	4	108.427	3.79838	100
python	simstring-rust (python bindings)	2	35.7809	0.415476	100
python	simstring-rust (python bindings)	3	41.9651	0.438991	100
python	simstring-rust (python bindings)	4	42.1236	0.405737	100
ruby	simstring-pure	2	624.516	7.42419	33
ruby	simstring-pure	3	677.849	7.82947	30
ruby	simstring-pure	4	784.459	9.72532	26
rust	simstring-rust (native)	2	33.3124	0.351372	100
rust	simstring-rust (native)	3	38.3721	0.478983	100
rust	simstring-rust (native)	4	40.244	3.24399	100

Search Benchmark

language	backend	ngram_size	threshold	mean	stddev	iterations
julia	SimString.jl	2	0.6	346.926	2.83019	58
julia	SimString.jl	2	0.7	221.385	1.69771	91
julia	SimString.jl	2	0.8	122.473	1.44932	100
julia	SimString.jl	3	0.6	287.79	2.25721	70
julia	SimString.jl	3	0.7	190.528	2.96439	100
julia	SimString.jl	3	0.8	112.615	2.42252	100
julia	SimString.jl	4	0.6	265.644	8.03451	76
julia	SimString.jl	4	0.7	180.777	2.12402	100
julia	SimString.jl	4	0.8	108.05	2.64742	100
python	simstring-fast	2	0.6	100.127	1.71055	100
python	simstring-fast	2	0.7	45.7887	0.106501	100
python	simstring-fast	2	0.8	19.8928	0.208479	100
python	simstring-fast	2	0.9	8.65648	0.037088	100
python	simstring-fast	3	0.6	73.8726	3.03744	100
python	simstring-fast	3	0.7	33.3887	0.0978673	100
python	simstring-fast	3	0.8	16.56	0.05992	100
python	simstring-fast	3	0.9	8.77197	0.0441333	100
python	simstring-fast	4	0.6	62.4556	3.86528	100
python	simstring-fast	4	0.7	31.3141	0.59432	100
python	simstring-fast	4	0.8	16.2826	0.0665898	100
python	simstring-fast	4	0.9	9.0905	0.0426063	100
python	simstring-rust (python bindings)	2	0.6	14.3298	1.54831	100
python	simstring-rust (python bindings)	2	0.7	8.94484	0.556435	100
python	simstring-rust (python bindings)	2	0.8	5.30066	0.14189	100
python	simstring-rust (python bindings)	2	0.9	3.40202	0.0983849	100
python	simstring-rust (python bindings)	3	0.6	12.3819	0.940079	100
python	simstring-rust (python bindings)	3	0.7	8.50423	0.92888	100
python	simstring-rust (python bindings)	3	0.8	5.15402	0.435975	100
python	simstring-rust (python bindings)	3	0.9	3.50378	0.13205	100
python	simstring-rust (python bindings)	4	0.6	12.0472	0.971295	100
python	simstring-rust (python bindings)	4	0.7	8.71861	0.752842	100
python	simstring-rust (python bindings)	4	0.8	5.58557	0.374837	100
python	simstring-rust (python bindings)	4	0.9	3.74723	0.0885693	100
ruby	simstring-pure	2	0.6	771.106	3.2249	26
ruby	simstring-pure	2	0.7	378.367	3.28267	53
ruby	simstring-pure	2	0.8	173.488	2.23041	100
ruby	simstring-pure	3	0.6	607.963	3.00919	33
ruby	simstring-pure	3	0.7	300.079	1.09873	67
ruby	simstring-pure	3	0.8	153.721	0.830336	100
ruby	simstring-pure	4	0.6	549.7	3.98486	37
ruby	simstring-pure	4	0.7	296.264	0.757939	68
ruby	simstring-pure	4	0.8	157.969	0.63191	100
rust	simstring-rust (native)	2	0.6	13.2874	0.125435	100
rust	simstring-rust (native)	2	0.7	8.25208	0.0640994	100
rust	simstring-rust (native)	2	0.8	4.88292	0.0446596	100
rust	simstring-rust (native)	2	0.9	2.88386	0.0535525	100
rust	simstring-rust (native)	3	0.6	11.9949	0.188696	100
rust	simstring-rust (native)	3	0.7	7.96013	0.127547	100
rust	simstring-rust (native)	3	0.8	4.8936	0.0952878	100
rust	simstring-rust (native)	3	0.9	2.95208	0.143157	100
rust	simstring-rust (native)	4	0.6	12.0409	0.0795311	100
rust	simstring-rust (native)	4	0.7	8.67798	0.0635088	100
rust	simstring-rust (native)	4	0.8	5.38884	0.0548287	100
rust	simstring-rust (native)	4	0.9	3.2659	0.0410311	100

PyDataBlog added 6 commits August 3, 2025 18:43

perf(search): Initial optimization round which improves searches

b7a82f7

feat(bindings): Added strings method for getting all stored strings &…

488ed51

… more search improvements

feat(test): Added python test to code coverage

a7d71b0

fix(ci): Fixed grcov ignore flag

7d7e643

fix(ci): Added missing rustup component

5c02c1f

fix(ci): Enabled ignored tests for coverage runs

84ef705

PyDataBlog self-assigned this Aug 6, 2025

chore: fixed code formatting

567642d

chore(ci): Attempt to add ignored python bindings test to test coverage

0d29373

chore(ci): excluded examples and build scripts from test coverage

78e34aa

PyDataBlog merged commit d53e85b into main Aug 6, 2025
33 checks passed

PyDataBlog deleted the feat/optimise-similarity-search branch August 6, 2025 20:36

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feat(perf): better search performance by avoiding allocations#40

feat(perf): better search performance by avoiding allocations#40
PyDataBlog merged 9 commits intomainfrom
feat/optimise-similarity-search

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