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Porting of 2d_autoencoderkl and 3d_autoencoderkl tutorials from MONAI generative #1823

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merged 32 commits into from
Sep 20, 2024

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virginiafdez
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Fixes # .

Description

Incorporation of tutorials for AuoencoderKL (2D and 3D) as part of the porting of MONAI Generative Models.

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • [X ] For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t <path to .ipynb file>

Virginia Fernandez and others added 20 commits September 4, 2024 17:49
…the synthetic process. We used BraTS and conditioning on binary brain masks.

Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
# Conflicts:
#	generation/controlnet/2d_controlnet.ipynb
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
…ed PEP8 compliance.

Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
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Virginia Fernandez added 2 commits September 11, 2024 11:56
… typo).

Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
virginiafdez and others added 2 commits September 16, 2024 16:43
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
README.md Outdated Show resolved Hide resolved
Virginia Fernandez and others added 4 commits September 20, 2024 16:26
Signed-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>
Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>
Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>
Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>
@ericspod ericspod enabled auto-merge (squash) September 20, 2024 21:11
@ericspod ericspod merged commit e5ba6d5 into Project-MONAI:main Sep 20, 2024
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3 participants