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Fix/show graph/cim #2280

Merged
merged 16 commits into from
Jan 8, 2022
Merged

Fix/show graph/cim #2280

merged 16 commits into from
Jan 8, 2022

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jdcpni
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@jdcpni jdcpni commented Jan 7, 2022

• showgraph.py:
  - _assign_incoming_edges():  allow input_CIM of outermost comp to render as node
  - _assign_controller_components():
    allow direct projections from nested nodes to OCM or ObjectiveMechanism when show_cim=False

• test_show_graph.py:
add test_projections_from_nested_comp_to_ocm_or_obj_mech

jdcpni and others added 15 commits November 15, 2021 14:44
…Link into devel

� Conflicts:
�	psyneulink/core/components/mechanisms/modulatory/control/optimizationcontrolmechanism.py
  - _assign_incoming_edges():  allow input_CIM of outermost comp to render as node
  - _assign_incoming_edges():  allow input_CIM of outermost comp to render as node
  - _assign_controller_components():
    allow direct projections from nested nodes to OCM or ObjectiveMechanism when show_cim=False
  add test_projections_from_nested_comp_to_ocm_or_obj_mech
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This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/CompositionInterfaceMechanism.html docs-head/CompositionInterfaceMechanism.html
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< <dt class="sig sig-object py" id="psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM">
< <span class="sig-name descname"><span class="pre">_get_source_node_for_input_CIM</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">port</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">start_comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">end_comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM" title="Permalink to this definition">¶</a></dt>
< <dd><p>Return Port, Node and Composition  for source of projection to input_CIM from (possibly nested) outer comp
< <strong>port</strong> should be an InputPort or OutputPort of the CompositionInterfaceMechanism;
< <strong>comp</strong> specifies the Composition at which to begin the search (or continue it when called recursively;</p>
< <blockquote>
< <div><p>assumes the current CompositionInterfaceMechanism’s Composition by default</p>
< </div></blockquote>
< </dd></dl>
< 
< <dl class="py method">
diff -r docs-base/genindex.html docs-head/genindex.html
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<       <li><a href="CompositionInterfaceMechanism.html#psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM">_get_source_node_for_input_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method)</a>
< </li>
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This pull request introduces 1 alert when merging 67ccee1 into da4ecb7 - view on LGTM.com

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Coverage increased (+0.2%) to 84.494% when pulling 67ccee1 on fix/show_graph/cim into da4ecb7 on devel.

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This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/CompositionInterfaceMechanism.html docs-head/CompositionInterfaceMechanism.html
391,401d390
< <dt class="sig sig-object py" id="psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM">
< <span class="sig-name descname"><span class="pre">_get_source_node_for_input_CIM</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">port</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">start_comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">end_comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM" title="Permalink to this definition">¶</a></dt>
< <dd><p>Return Port, Node and Composition  for source of projection to input_CIM from (possibly nested) outer comp
< <strong>port</strong> should be an InputPort or OutputPort of the CompositionInterfaceMechanism;
< <strong>comp</strong> specifies the Composition at which to begin the search (or continue it when called recursively;</p>
< <blockquote>
< <div><p>assumes the current CompositionInterfaceMechanism’s Composition by default</p>
< </div></blockquote>
< </dd></dl>
< 
< <dl class="py method">
diff -r docs-base/genindex.html docs-head/genindex.html
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<       <li><a href="CompositionInterfaceMechanism.html#psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism._get_source_node_for_input_CIM">_get_source_node_for_input_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method)</a>
< </li>
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<   </ul></td>
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1c1
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...

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# The bug may be the same one as in eb61303808ad2a5ba46fdd18d0e583283397915c
raise(AssertionError,"FAILURE TO REPLICATE BUGGY SHOW_GRAPH OUTPUT -- SEE COMMENT IN TEST")
else:
raise(AssertionError)
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thiscan be just:
raise

to forward the existing exception/assertion instead of creating a new one

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lgtm-com bot commented Jan 8, 2022

This pull request introduces 1 alert when merging 4c3ff97 into 544c1ec - view on LGTM.com

new alerts:

  • 1 for Unnecessary pass

@jdcpni jdcpni merged commit 21e685c into devel Jan 8, 2022
@jdcpni jdcpni deleted the fix/show_graph/cim branch January 8, 2022 16:34
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3 participants