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Devel #2099

Merged
merged 22 commits into from
Aug 10, 2021
Merged

Devel #2099

merged 22 commits into from
Aug 10, 2021

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kmantel
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@kmantel kmantel commented Aug 6, 2021

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dependabot bot and others added 21 commits June 23, 2021 03:16
"context", equivalent to current execution_id will be used in standalone
scheduler, and parsing from Context will be done by psyneulink wrapper
Updates the requirements on [rich](https://github.com/willmcgugan/rich) to permit the latest version.
- [Release notes](https://github.com/willmcgugan/rich/releases)
- [Changelog](https://github.com/willmcgugan/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v10.1.0...v10.5.0)

---
updated-dependencies:
- dependency-name: rich
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
…l/rich-gte-10.1-and-lt-10.6

requirements: update rich requirement from <10.5,>=10.1 to >=10.1,<10.6
…ms (#2094)

ensure reset after calling a Function alone, not just as part of another
Component
Signed-off-by: Jan Vesely <jan.vesely@rutgers.edu>
- add wrappers around standalone scheduling classes to provide
psyneulink-specific functionality
- fix various assumptions that no longer hold as a result of making
graph_scheduler generic
Replace internal scheduler with graph_scheduler package
Updates the requirements on [rich](https://github.com/willmcgugan/rich) to permit the latest version.
- [Release notes](https://github.com/willmcgugan/rich/releases)
- [Changelog](https://github.com/willmcgugan/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v10.1.0...v10.6.0)

---
updated-dependencies:
- dependency-name: rich
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
…l/rich-gte-10.1-and-lt-10.7

requirements: update rich requirement from <10.6,>=10.1 to >=10.1,<10.7
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github-actions bot commented Aug 6, 2021

This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/.buildinfo docs-head/.buildinfo
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diff -r docs-base/AGT.html docs-head/AGT.html
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diff -r docs-base/AGTControlMechanism.html docs-head/AGTControlMechanism.html
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism">
< <em class="property">class </em><code class="sig-prename descclassname">psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.</code><code class="sig-name descname">AGTControlMechanism</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">monitored_output_ports</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">control_signals</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism">
> <em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.</span></span><span class="sig-name descname"><span class="pre">AGTControlMechanism</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">monitored_output_ports</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">control_signals</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism">
< <code class="sig-name descname">objective_mechanism</code><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism">
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports">
< <code class="sig-name descname">monitored_output_ports</code><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports">
> <span class="sig-name descname"><span class="pre">monitored_output_ports</span></span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents">
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---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents">
> <span class="sig-name descname"><span class="pre">monitored_output_ports_weights_and_exponents</span></span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params">
< <code class="sig-name descname">_validate_params</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">request_set</span></em>, <em class="sig-param"><span class="n">target_set</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">context</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params">
> <span class="sig-name descname"><span class="pre">_validate_params</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">request_set</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_set</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show">
< <code class="sig-name descname">show</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show">
> <span class="sig-name descname"><span class="pre">show</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMecha
...

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coveralls commented Aug 6, 2021

Coverage Status

Coverage decreased (-0.2%) to 83.48% when pulling 8eed471 on devel into 5eb2ead on master.

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lgtm-com bot commented Aug 6, 2021

This pull request fixes 2 alerts when merging b17e999 into 5eb2ead - view on LGTM.com

fixed alerts:

  • 1 for `__eq__` not overridden when adding attributes
  • 1 for Except block handles 'BaseException'

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github-actions bot commented Aug 7, 2021

This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/.buildinfo docs-head/.buildinfo
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diff -r docs-base/AGT.html docs-head/AGT.html
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>   <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
>   <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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>          <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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<          <script src="_static/language_data.js"></script>
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diff -r docs-base/AGTControlMechanism.html docs-head/AGTControlMechanism.html
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>   <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
>   <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism">
< <em class="property">class </em><code class="sig-prename descclassname">psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.</code><code class="sig-name descname">AGTControlMechanism</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">monitored_output_ports</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">control_signals</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism">
> <em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.</span></span><span class="sig-name descname"><span class="pre">AGTControlMechanism</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">monitored_output_ports</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">control_signals</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism">
< <code class="sig-name descname">objective_mechanism</code><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism">
> <span class="sig-name descname"><span class="pre">objective_mechanism</span></span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.objective_mechanism" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports">
< <code class="sig-name descname">monitored_output_ports</code><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports">
> <span class="sig-name descname"><span class="pre">monitored_output_ports</span></span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents">
< <code class="sig-name descname">monitored_output_ports_weights_and_exponents</code><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents">
> <span class="sig-name descname"><span class="pre">monitored_output_ports_weights_and_exponents</span></span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.monitored_output_ports_weights_and_exponents" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params">
< <code class="sig-name descname">_validate_params</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">request_set</span></em>, <em class="sig-param"><span class="n">target_set</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">context</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params">
> <span class="sig-name descname"><span class="pre">_validate_params</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">request_set</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_set</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">context</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism._validate_params" title="Permalink to this definition">¶</a></dt>
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< <dt id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show">
< <code class="sig-name descname">show</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show" title="Permalink to this definition">¶</a></dt>
---
> <dt class="sig sig-object py" id="psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism.show">
> <span class="sig-name descname"><span class="pre">show</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMecha
...

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lgtm-com bot commented Aug 7, 2021

This pull request fixes 2 alerts when merging 8eed471 into 5eb2ead - view on LGTM.com

fixed alerts:

  • 1 for `__eq__` not overridden when adding attributes
  • 1 for Except block handles 'BaseException'

@kmantel kmantel merged commit cf381ac into master Aug 10, 2021
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