rename packages and modules to lowercase, and handle relevant import …

…changes

Scripts/DEBUGGING SCRIPTS/AGT Test Script.py

@@ -1,9 +1,9 @@
-from PsyNeuLink.Components.Functions.Function import FHNIntegrator
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Library.Subsystems.AGT.AGTControlMechanism import AGTControlMechanism
-from PsyNeuLink.Library.Subsystems.AGT.LCControlMechanism import LCControlMechanism
+from psyneulink.components.functions.function import FHNIntegrator
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.process import process
+from psyneulink.components.system import system
+from psyneulink.library.subsystems.agt.agtcontrolmechanism import AGTControlMechanism
+from psyneulink.library.subsystems.agt.lccontrolmechanism import LCControlMechanism
 
 decision_mech = TransferMechanism(name='Decision_Mech')
 

Scripts/DEBUGGING SCRIPTS/EVC Gratton Script - SEBASTIAN.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/EVC System Laming Validation Test Script [SPECIFY ControlSignals]].py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.States.ModulatorySignals.ControlSignal import ControlSignal
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.states.modulatorysignals.controlsignal import ControlSignal
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 random.seed(0)
 np.random.seed(0)

Scripts/DEBUGGING SCRIPTS/LCMechanism Test Script.py

@@ -1,8 +1,8 @@
-from PsyNeuLink.Components.Functions.Function import Linear, Logistic
-from PsyNeuLink.Components.Functions.Function import ModulationParam
-from PsyNeuLink.Components.Mechanisms.AdaptiveMechanisms.GatingMechanism.GatingMechanism import GatingMechanism
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Library.Subsystems.AGT.LCControlMechanism import LCControlMechanism
+from psyneulink.components.functions.function import Linear, Logistic
+from psyneulink.components.functions.function import ModulationParam
+from psyneulink.components.mechanisms.adaptive.gating.gatingmechanism import GatingMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.library.subsystems.agt.lccontrolmechanism import LCControlMechanism
 
 
 my_mech_1 = TransferMechanism(function=Linear, name='my_linear_mechanism')

Scripts/DEBUGGING SCRIPTS/Multilayer Learning Test Script [WITH GATING].py

@@ -1,11 +1,11 @@
-from PsyNeuLink.Components.Functions.Function import Logistic
-from PsyNeuLink.Components.Mechanisms.AdaptiveMechanisms.GatingMechanism.GatingMechanism import GatingMechanism
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.States.ModulatorySignals.GatingSignal import GatingSignal
-from PsyNeuLink.Components.States.OutputState import *
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Scheduling.Condition import AfterNCalls
+from psyneulink.components.functions.function import Logistic
+from psyneulink.components.mechanisms.adaptive.gating.gatingmechanism import GatingMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.process import process
+from psyneulink.components.states.modulatorysignals.gatingsignal import GatingSignal
+from psyneulink.components.states.outputstate import *
+from psyneulink.components.system import system
+from psyneulink.scheduling.condition import AfterNCalls
 
 # from PsyNeuLink.Globals.Run import run, construct_inputs
 
@@ -25,7 +25,7 @@
                         function=Logistic,
                         default_variable = [0,0,0])
 
-from PsyNeuLink.Components.States.InputState import InputState
+from psyneulink.components.states.inputstate import InputState
 
 my_input_state = InputState(
     # owner=Output_Layer,

Scripts/DEBUGGING SCRIPTS/OLD/EVC Gratton Script_Bug1.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Subsystems.EVC.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.subsystems.evc.evccontrolmechanism import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/EVC Gratton Script_Bug2.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Subsystems.EVC.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.subsystems.evc.evccontrolmechanism import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/EVC Gratton Script_Bug3.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/EVC Gratton Script_Bug4.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/EVC Gratton Script_Bug5.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/EVC System Laming Validation Test Script DEBUGGING.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 random.seed(0)
 np.random.seed(0)

Scripts/DEBUGGING SCRIPTS/OLD/EVC System Laming Validation Test Script VARIATIONS.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
-from PsyNeuLink.Components.Mechanisms.AdaptiveMechanisms.ControlMechanism.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.mechanisms.adaptive.control.EVCControlMechanism import EVCControlMechanism
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
 
 # import random
 # random.seed(0)

Scripts/DEBUGGING SCRIPTS/OLD/EVC_Gratton_Script_Validation.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
-from PsyNeuLink.Components.Projections.ControlProjection import ControlProjection
+from psyneulink.components.projections.ControlProjection import ControlProjection
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Mechanisms.AdaptiveMechanisms import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.mechanisms.adaptive import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/Multilayer Learning Test Script VARIATIONS.py

@@ -1,10 +1,10 @@
 # from PsyNeuLink.Components.Functions.Function import Logistic, random_matrix
-from PsyNeuLink.Components.Functions.Function import Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.PathwayProjections.MappingProjection import MappingProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Scheduling.TimeScale import TimeScale
+from psyneulink.components.functions.function import Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.process import process
+from psyneulink.components.projections.pathway.mappingprojection import MappingProjection
+from psyneulink.components.system import system
+from psyneulink.scheduling.timescale import TimeScale
 
 Input_Layer = TransferMechanism(name='Input Layer',
                        function=Logistic,

Scripts/DEBUGGING SCRIPTS/OLD/Scripts_DEBUGGING_SCRIPTS_EVC_Gratton_Script_-_SEBASTIAN_py.py

@@ -1,11 +1,11 @@
 # from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.Deprecated.LinearMechanism import *
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import *
-from PsyNeuLink.Components.Process import process
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import system
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Subsystems.EVC.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import *
+from psyneulink.components.process import process
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import system
+from psyneulink.globals.keywords import *
+from psyneulink.library.subsystems.evc.evccontrolmechanism import EVCControlMechanism
 
 
 def test_search_function(controller=None, **kwargs):

Scripts/DEBUGGING SCRIPTS/OLD/Sebastian's Multitasking Model.py

@@ -1,8 +1,8 @@
 # from PsyNeuLink.Components.Functions.Function import Logistic, random_matrix
-from PsyNeuLink.Components.Functions.Function import Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Projections.PathwayProjections.MappingProjection import MappingProjection
-from PsyNeuLink.Components.System import *
+from psyneulink.components.functions.function import Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.projections.pathway.mappingprojection import MappingProjection
+from psyneulink.components.system import *
 
 # specification of task environment
 NFeatures = 2

Scripts/DEBUGGING SCRIPTS/OLD/Stroop Model Learning Test Script - EQUAL.py

@@ -1,8 +1,8 @@
-from PsyNeuLink.Components.Functions.Function import Linear, Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Projections.PathwayProjections.MappingProjection import MappingProjection
-from PsyNeuLink.Components.System import *
-from PsyNeuLink.Globals.Keywords import *
+from psyneulink.components.functions.function import Linear, Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.projections.pathway.mappingprojection import MappingProjection
+from psyneulink.components.system import *
+from psyneulink.globals.keywords import *
 
 process_prefs = {REPORT_OUTPUT_PREF: True,
                  VERBOSE_PREF: False}

Scripts/DEBUGGING SCRIPTS/OLD/Stroop Model Learning and Control Test Script.py

@@ -1,9 +1,9 @@
-from PsyNeuLink.Components.Functions.Function import Linear, Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Projections.PathwayProjections.MappingProjection import MappingProjection
-from PsyNeuLink.Components.System import *
-from PsyNeuLink.Globals.Keywords import *
-from PsyNeuLink.Library.Subsystems.EVC.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.functions.function import Linear, Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.projections.pathway.mappingprojection import MappingProjection
+from psyneulink.components.system import *
+from psyneulink.globals.keywords import *
+from psyneulink.library.subsystems.evc.evccontrolmechanism import EVCControlMechanism
 
 process_prefs = {REPORT_OUTPUT_PREF: True,
                  VERBOSE_PREF: False}

Scripts/DEBUGGING SCRIPTS/OLD/Stroop Model Test Script VARIATIONS.py

@@ -1,7 +1,7 @@
-from PsyNeuLink.Components.Functions.Function import Linear, Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.System import *
-from PsyNeuLink.Globals.Keywords import *
+from psyneulink.components.functions.function import Linear, Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.system import *
+from psyneulink.globals.keywords import *
 
 process_prefs = {REPORT_OUTPUT_PREF: True,
                  VERBOSE_PREF: False}

Scripts/DEBUGGING SCRIPTS/OLD/StroopEVCforDST.py

@@ -5,10 +5,10 @@
 @author: lauraab
 """
 
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Projections.ModulatoryProjections.ControlProjection import ControlProjection
-from PsyNeuLink.Components.System import *
-from PsyNeuLink.Library.Subsystems.EVC.EVCControlMechanism import EVCControlMechanism
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.projections.modulatory.controlprojection import ControlProjection
+from psyneulink.components.system import *
+from psyneulink.library.subsystems.evc.evccontrolmechanism import EVCControlMechanism
 
 #helpful commands! .show()   .excute()
 color_word_combine = TransferMechanism(name='color_word_combine', function = Linear()) #default_variable = [1], #JON HOW TO MAKE THIS A SUBTRACTION?

Scripts/DEBUGGING SCRIPTS/OLD/Stroop_model_markus.py

@@ -1,8 +1,8 @@
 # from PsyNeuLink.Components.Functions.Function import Logistic, random_matrix
-from PsyNeuLink.Components.Functions.Function import Logistic
-from PsyNeuLink.Components.Mechanisms.ProcessingMechanisms.TransferMechanism import TransferMechanism
-from PsyNeuLink.Components.Projections.PathwayProjections.MappingProjection import MappingProjection
-from PsyNeuLink.Components.System import *
+from psyneulink.components.functions.function import Logistic
+from psyneulink.components.mechanisms.processing.transfermechanism import TransferMechanism
+from psyneulink.components.projections.pathway.mappingprojection import MappingProjection
+from psyneulink.components.system import *
 
 # specification of task environment
 NFeatures = 1