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PoisotLab · Mar 19, 2024 · 42db90c · 42db90c
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-3d581e60
+0d4f105b
diff --git a/index-meca.zip b/index-meca.zip
diff --git a/index.docx b/index.docx
diff --git a/index.html b/index.html
@@ -2,13 +2,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.24">
+<meta name="generator" content="quarto-1.5.25">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
 <meta name="author" content="Tanya Strydom">
 <meta name="author" content="Timothée Poisot">
-<meta name="dcterms.date" content="2024-03-13">
+<meta name="dcterms.date" content="2024-03-19">
 <meta name="keywords" content="wombling, spatial networks">
 
 <title>Omnomnomnivores</title>
@@ -100,10 +100,10 @@
 <meta name="citation_keywords" content="wombling,spatial networks">
 <meta name="citation_author" content="Tanya Strydom">
 <meta name="citation_author" content="Timothée Poisot">
-<meta name="citation_publication_date" content="2024-03-13">
-<meta name="citation_cover_date" content="2024-03-13">
+<meta name="citation_publication_date" content="2024-03-19">
+<meta name="citation_cover_date" content="2024-03-19">
 <meta name="citation_year" content="2024">
-<meta name="citation_online_date" content="2024-03-13">
+<meta name="citation_online_date" content="2024-03-19">
 <meta name="citation_language" content="en">
 <meta name="citation_journal_title" content="Earth and Space Science">
 <meta name="citation_reference" content="citation_title=EcoJulia/NeutralLandscapes.jl;,citation_abstract=Generation of neutral landscapes in Julia.;,citation_author=Michael D. Catchen;,citation_publication_date=2023-12;,citation_cover_date=2023-12;,citation_year=2023;,citation_publisher=EcoJulia;">
@@ -157,7 +157,7 @@ <h1 class="title">Omnomnomnivores</h1>
                 <div>
             <div class="quarto-title-meta-heading">Published</div>
             <div class="quarto-title-meta-contents">
-              <p class="date">March 13, 2024</p>
+              <p class="date">March 19, 2024</p>
             </div>
           </div>
 
@@ -393,13 +393,13 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
 <div id="quarto-appendix" class="default"><section class="quarto-appendix-contents" id="quarto-citation"><h2 class="anchored quarto-appendix-heading">Citation</h2><div><div class="quarto-appendix-secondary-label">BibTeX citation:</div><pre class="sourceCode code-with-copy quarto-appendix-bibtex"><code class="sourceCode bibtex">@online{strydom2024,
   author = {Strydom, Tanya and Poisot, Timothée},
   title = {Omnomnomnivores},
-  date = {2024-03-13},
+  date = {2024-03-19},
   langid = {en},
   abstract = {TODO}
 }
 </code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre><div class="quarto-appendix-secondary-label">For attribution, please cite this work as:</div><div id="ref-strydom2024" class="csl-entry quarto-appendix-citeas" role="listitem">
 Strydom, Tanya, and Timothée Poisot. 2024.
-<span>“Omnomnomnivores.”</span> Earth and Space Science. March 13, 2024.
+<span>“Omnomnomnivores.”</span> Earth and Space Science. March 19, 2024.
 </div></div></section></div></main>
 <!-- /main column -->
 <script id="quarto-html-after-body" type="application/javascript">
@@ -437,18 +437,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
     }
     return false;
   }
-  const clipboard = new window.ClipboardJS('.code-copy-button', {
-    text: function(trigger) {
-      const codeEl = trigger.previousElementSibling.cloneNode(true);
-      for (const childEl of codeEl.children) {
-        if (isCodeAnnotation(childEl)) {
-          childEl.remove();
-        }
-      }
-      return codeEl.innerText;
-    }
-  });
-  clipboard.on('success', function(e) {
+  const onCopySuccess = function(e) {
     // button target
     const button = e.trigger;
     // don't keep focus
@@ -480,7 +469,29 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
     }, 1000);
     // clear code selection
     e.clearSelection();
+  }
+  const getTextToCopy = function(trigger) {
+      const codeEl = trigger.previousElementSibling.cloneNode(true);
+      for (const childEl of codeEl.children) {
+        if (isCodeAnnotation(childEl)) {
+          childEl.remove();
+        }
+      }
+      return codeEl.innerText;
+  }
+  const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
+    text: getTextToCopy
   });
+  clipboard.on('success', onCopySuccess);
+  if (window.document.getElementById('quarto-embedded-source-code-modal')) {
+    // For code content inside modals, clipBoardJS needs to be initialized with a container option
+    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
+    const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
+      text: getTextToCopy,
+      container: window.document.getElementById('quarto-embedded-source-code-modal')
+    });
+    clipboardModal.on('success', onCopySuccess);
+  }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
       var filterRegex = new RegExp('/' + window.location.host + '/');

diff --git a/index.pdf b/index.pdf
diff --git a/index.xml b/index.xml
@@ -95,10 +95,10 @@ and Interchange DTD v1.2 20190208//EN" "JATS-archivearticle1.dtd">
 <corresp id="cor-2">timothee.poisot@umontreal.ca</corresp>
 </author-notes>
 
-<pub-date date-type="pub" publication-format="electronic" iso-8601-date="2024-03-13">
+<pub-date date-type="pub" publication-format="electronic" iso-8601-date="2024-03-19">
 <year>2024</year>
 <month>3</month>
-<day>13</day>
+<day>19</day>
 </pub-date>
 
 

diff --git a/site_libs/bootstrap/bootstrap.min.js b/site_libs/bootstrap/bootstrap.min.js
diff --git a/site_libs/quarto-html/quarto.js b/site_libs/quarto-html/quarto.js
@@ -9,7 +9,7 @@ const layoutMarginEls = () => {
   // Find any conflicting margin elements and add margins to the
   // top to prevent overlap
   const marginChildren = window.document.querySelectorAll(
-    ".column-margin.column-container > *, .margin-caption, .aside"
+    ".column-margin.column-container > * "
   );
 
   let lastBottom = 0;
@@ -19,9 +19,7 @@ const layoutMarginEls = () => {
       marginChild.style.marginTop = null;
       const top = marginChild.getBoundingClientRect().top + window.scrollY;
       if (top < lastBottom) {
-        const marginChildStyle = window.getComputedStyle(marginChild);
-        const marginBottom = parseFloat(marginChildStyle["marginBottom"]);
-        const margin = lastBottom - top + marginBottom;
+        const margin = lastBottom - top;
         marginChild.style.marginTop = `${margin}px`;
       }
       const styles = window.getComputedStyle(marginChild);
@@ -35,15 +33,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
   // Recompute the position of margin elements anytime the body size changes
   if (window.ResizeObserver) {
     const resizeObserver = new window.ResizeObserver(
-      throttle(() => {
-        layoutMarginEls();
-        if (
-          window.document.body.getBoundingClientRect().width < 990 &&
-          isReaderMode()
-        ) {
-          quartoToggleReader();
-        }
-      }, 50)
+      throttle(layoutMarginEls, 50)
     );
     resizeObserver.observe(window.document.body);
   }