legend not working when using samples argument in mafSurvival

[albamrt]

Describe the issue
When using the 'samples' argument of the mafSurvival function the legend does not work properly. It keeps saying 'Mutant' and 'WT' (does not use the groupNames argument) and does not count the Ns [N = 0].

Command

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml.clin <- system.file("extdata", "tcga_laml_annot.tsv", package = "maftools")
laml <- read.maf(maf = laml.maf,  clinicalData = laml.clin)
mafSurvival(maf = laml, samples = laml@clinical.data$Tumor_Sample_Barcode[laml@clinical.data$FAB_classification == 'M2'], 
            time = 'days_to_last_followup', Status = 'Overall_Survival_Status', 
            groupNames = c('M2', 'Other'))

Session info

sessionInfo()

R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale:
[1] LC_COLLATE=Spanish_Spain.utf8 LC_CTYPE=Spanish_Spain.utf8 LC_MONETARY=Spanish_Spain.utf8 LC_NUMERIC=C
[5] LC_TIME=Spanish_Spain.utf8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] maftools_2.14.0

loaded via a namespace (and not attached):
[1] lattice_0.20-45 digest_0.6.30 R.methodsS3_1.8.2 grid_4.2.2 evaluate_0.21 rlang_1.1.0 cli_3.4.1
[8] data.table_1.14.6 rstudioapi_0.14 R.oo_1.25.0 R.utils_2.12.2 Matrix_1.5-1 rmarkdown_2.21 splines_4.2.2
[15] RColorBrewer_1.1-3 tools_4.2.2 xfun_0.37 yaml_2.3.7 survival_3.4-0 fastmap_1.1.0 compiler_4.2.2
[22] htmltools_0.5.4 knitr_1.42 DNAcopy_1.72.3

[github-actions]

This issue is stale because it has been open for 30 days with no activity.

[PoisonAlien]

Hi,
Thank you for issue and sorry for the late reply. I am following up on all the old issues now. In case of you are still using the tools, I have pushed a patch which should fix the bug . I hope this helps.