fix typo for #1028

PoisonAlien · Jun 10, 2024 · 1992ee7 · 1992ee7
1 parent 949534d
commit 1992ee7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/ntcounts.R b/R/ntcounts.R
@@ -28,8 +28,8 @@ bamreadcounts = function(bam = NULL, loci = NULL, zerobased = FALSE, mapq = 10,
       stop("BAM file does not exist: ", x)
     }
 
-    if(!file.exists(paste0(bam , ".bai"))){
-      stop("Index file for ", bam, " not found!")
+    if(!file.exists(paste0(x , ".bai"))){
+      stop("Index file for ", x, " not found!")
     }
 
     gsub(pattern = "\\.bam$", replacement = "", x = basename(x), ignore.case = TRUE)