Skip to content

Tags: Poirazi-Lab/dendrify

Tags

v.2.2.0

Toggle v.2.2.0's commit message
Merge branch 'development'

v.2.1.5

Toggle v.2.1.5's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
Updated release notes

v.2.1.4

Toggle v.2.1.4's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
Hopefully RTD works (#36)

* Fixed a bug that caused an error when multiple different types were created

* Updated the backprop example

* Minor changes to prepare for new release

* Minor change

* Version changes

* Minor changes

* Hopefullt fixed version system

* Updated changelog

* Trying to fix RTD errors

* Grrr

* grrrrrr

* Fixed bugs with RTD not allowing RTD to build

v.2.1.3

Toggle v.2.1.3's commit message
Update package requirements to fix installation conflicts with Brian …

…2.6.0

v.2.1.2

Toggle v.2.1.2's commit message
Minor bug fixes before 2.1.2 release

v.2.1.1

Toggle v.2.1.1's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
Update changelog.rst

v.2.1.0

Toggle v.2.1.0's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
Development (#30)

* Improved code quality using pylint

* Set order to start in run_on_event method

* Numerous documentation changes

* Added examples for synaptic models

* Changed order of dspikes to "before_groups"

* More documentation updates

* Documentation changes

* Added cadif to equations

* Many  additions of new and updates of old examples

* Last touches before new release

* Add project URLs to setup.py

v.2.0.1

Toggle v.2.0.1's commit message
Update version to 2.0.1 and add cadIF model

v.2.0.0

Toggle v.2.0.0's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
Pushing version 2.0.0 to main (#28)

* Update conf.py

* Update setup.py

* Updated docs

* Updated documentation with usage examples

* Updated models documentation

* Removing some dendrite-specific features from Soma

* Implemented a simple logging function

* Updated gitignore

* Updated ephys to account for dimensionless

* Updated ephys: dimensionless, better errors, logging

* updated gitignore

* Improving compartment.py

* Syncing changes from main to development (#21)

* Update README.rst

* Update README.rst

* Updated Fig2_notebook.ipynb

!pip install dendrify==1.0.8 --quiet

* Updating development (#22)

* Update README.rst

* Update README.rst

* Updated Fig2_notebook.ipynb

!pip install dendrify==1.0.8 --quiet

* Update Fig3_notebook.ipynb

* Update Fig4_notebook.ipynb

* Update Fig5_notebook.ipynb

* Made from scratch a new dSpike mechanism

* Updated __str__ method and implemented pprint.

* Updated custom events, __str__ and type checking

* Implemented default params functionality

* Added config_dspikes and did  minor changes

* Added some files to .gitignore

* Reduced checks for dSpikes and added timesteps

* Minor improvements

* Updated gitignore

* Added PointNeuronModel

* Added PointNeuronModel to init

* Resolved  double connection when using ipython

* Added more methods to PointNeuronModel

* NeuronModel uses copies of compartments

* Improved compartment parsing for NeuronModel.

* Updated PointNeuronModel class

* Updated .gitignore

* Added option to just view default_params

* Changed order of processes within connect()

* Added a check for dimensionless within connect

* Fixed a bug in connect

* Added option for figsize in as_graph()

* install requires brian 2.5.4

* Added more parameters to make_neurongroup

* added second reset functionality to neuronmodel

* Updated docs of ephysproperties

* Finished docs of compartment and cleared code

* Simplified docstrings

* Added tutorials and pointneuronmodel to docs

* Improved installation guidelines

* Minor changes

* Fixed index file

* Updated installation guidelines

* Finished docstrings of all classes

* Fixed tuple bug when creating a NeuronGroup

* Documentation changes

* Documentation improvements

* Fixed a weird bug that was raising silly errors

* Minor changes

* Experimenting with pytest

* Created using Colaboratory

* Colab test

* Fixed docs

* Made PointNeuronModel from scratch

* added 3 examples with point adex

* cleared repo

* Minor changes

* Updated tutorials

* Updated docs

* Automated examples to rst

* Added point neuron models

* Fixed a bug in _set_properties

* Removed scale & spine factor from NeuronModel init

* Many documentation updates

* Added tau validation to docs

* Minor changes

* Minor documentation changes

* FIxed duplicate label warning from sphinx

* Added FI curve to docs

* Minor changes

* Added more validation tests to docs

* Dendritic IO + other docs improvements

* Added more examples

* minor

* Fixed bug that initialized area_factors with None

* Fixed _set_properties bug with area factors

* Finished all validation examples

* More documentation changes

* Added logo

* Fixed intro images in docs

* Improved colors for docs

* Changed hover color

* Minor

* Improved model library in docs

* Changed changelog :)

* Minor changes docs

* Minor

* Added understanding dSpikes to docs

* Minor changes

* Fixed background color for intro figs

* Updated readme and docs

* Updated Readme

* Updated changelog

* Updated release noted and COC

* Updated release notes

* Finished docs

* Updated conf

* Updated rtd config file

v1.0.9

Toggle v1.0.9's commit message

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
Update publish-to-pypi.yml (#26)