Merge pull request #78 from Plant-Food-Research-Open/fix/star

Now using the correct out channel from STAR_ALIGN

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v0.5.0dev - [22-Oct-2024]
+## v0.5.0dev - [29-Oct-2024]
 
 ### `Added`
 
@@ -14,9 +14,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Fixed`
 
 1. Now using `${meta.id}_trim` as prefix for `FASTQC` files
-2. Added `monochromeLogs` parameter to suppress warnings
-3. Updated citations to include DOIs
-4. Fixed a bug where FASTQ versions were not correctly captured.
+2. Updated citations to include DOIs
+3. Fixed a bug where FASTQ versions were not correctly captured.
+4. Now using the correct out channel from `STAR_ALIGN`. This bug was introduced by a module update during the development of this version [#74](https://github.com/Plant-Food-Research-Open/genepal/issues/74)
 
 ### `Dependencies`
 

subworkflows/local/align_rnaseq.nf

@@ -44,7 +44,7 @@ workflow ALIGN_RNASEQ {
         seq_center
     )
 
-    ch_star_bam                 = STAR_ALIGN.out.bam_sorted
+    ch_star_bam                 = STAR_ALIGN.out.bam_sorted_aligned
     ch_versions                 = ch_versions.mix(STAR_ALIGN.out.versions.first())
 
     // MODULE: SAMTOOLS_CAT