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[UPDATE] NCBI FSC-GX

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#195 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 18, 2025

 ·  

2.3.0

The HiC workflow does not work for combined assemblies

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#194 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 13, 2025

 ·  

2.3.0

Create a map-back-profile

enhancementNew feature or requestNew feature or request

Status: Open.

#193 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 13, 2025

Update nf-core template, modules and sub workflows

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#191 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 11, 2025

 ·  

2.3.0

Add a parameter to enable/disable multi-mapping in the HiC module

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#189 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 10, 2025

 ·  

2.3.0

Make the alphanumeric FASTA sequence sorting in HiC map optional

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#188 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Mar 10, 2025

 ·  

2.3.0

busco needs --offline flag

awaiting-feedbackWaiting for input from userWaiting for input from user

bugSomething isn't workingSomething isn't working

Stale

Status: Open.

#187 In Plant-Food-Research-Open/assemblyqc;

· AlcaArctica opened on Jan 31, 2025

Silent OOM bug with large Hi-C Datasets

bugSomething isn't workingSomething isn't working

Status: Open.

#186 In Plant-Food-Research-Open/assemblyqc;

· ignacio3437 opened on Dec 11, 2024

Add extra parameters for MUMme/Circos/dotplot workflow

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#182 In Plant-Food-Research-Open/assemblyqc;

· CeciliaDeng opened on Nov 20, 2024

 ·  

2.3.0

Kraken2 DB: missing pyrus

bugSomething isn't workingSomething isn't working

Status: Open.

#181 In Plant-Food-Research-Open/assemblyqc;

· CeciliaDeng opened on Nov 19, 2024

Add a validation check for 100% Ns in a sequence

enhancementNew feature or requestNew feature or request

Status: Open.

#173 In Plant-Food-Research-Open/assemblyqc;

· GallVp opened on Nov 3, 2024

 ·  

2.3.0

Enquiry: Kraken2 result. Pear sequences tagged as apple

bugSomething isn't workingSomething isn't working

Status: Open.

#169 In Plant-Food-Research-Open/assemblyqc;

· CeciliaDeng opened on Oct 29, 2024