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7 changes: 7 additions & 0 deletions class_materials/Visualization/2019/README.md
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# 2019 Data Vis Lecture

This directory contains the lecture materials, the notebook used to generate the plots used in the lecture, and the homework assignment.
All data used by these scripts is included in the directory `data`, but the paths in the notebooks assume the data is in the current directory to make things easier for the students.

Most of the data was generated specifically for this lecture, with the exception of `volcano_data.tsv`.
`volcano_data.tsv` is under a Creative Commons Attribution 4.0 license, and the original source can be found [here](https://zenodo.org/record/2529117)
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51 changes: 51 additions & 0 deletions class_materials/Visualization/2019/data/box_plot.tsv
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treated control
155.78837685055169 115.83496303194929
145.29418703310026 132.1136198718127
149.18814652151016 126.72654884613962
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146.59576710272572 133.62784930029136
147.3987740400246 133.2420933101031
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155.27156995855245 129.00845611722946
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152.02942968132655 124.3185364324734
147.26163783141985 133.47614666943622
143.03977934414655 132.93890999651248
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88.26322832779867 127.26655827762869
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87.24355863097617 133.1258415651872
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85.40286509590794 132.6600259290252
86.50742812470818 126.13251820176174
9,502 changes: 9,502 additions & 0 deletions class_materials/Visualization/2019/data/gwas.csv

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31 changes: 31 additions & 0 deletions class_materials/Visualization/2019/data/heatmap.csv
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genes,case_1,case_2,case_3,control_1,control_2
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OTJ0,2.2528411170407936,1.7853657267371945,-0.7264146523375987,1.4785486561705568,-0.03767421707944811
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