More salient organism in entity grounding popover #866
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- Make the organism name salient (at the top) in the grounding popover. - Add `ent.organism()` shortcut function to get the `Organism` an `Entity` is grounded to (may be null for chemical). - Add `doc.commonOrganism()` to get the most common `Organism` in a `Document` -- may be null in the case of a tie. - Add `doc.irregularOrganismEntities()` to get an array of entities that are grounded to an organism other than the common one. Refs. : - Grounding: Entity organism preference / mixed organisms for genes #861 - Block users from submitting empty documents #860
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@jvwong, you should be able to use those functions for the submission task list. |
jvwong
approved these changes
Oct 8, 2020
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ent.organism()shortcut function to get theOrganismanEntityis grounded to (may be null for chemical).doc.commonOrganism()to get the most commonOrganismin aDocument-- may be null if no NCBI groundings exist.doc.irregularOrganismEntities()to get an array of entities that are grounded to an organism other than the common one.Refs. :