Repeatdt small chunksize warning #1430
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR adds support for setting the chunksize of the
trajectorydimension in a ParticleFile larger than the initial ParticleSet.This is especially important when using
repeatdt, as we've experienced thatpset.execute()can become very slow for small initial particle sets that are very often repeated, because zarr writes one file for each particle in that case. Hence, there's now also a warning when using repeatdt and the chunksize is small.This PR fixes #1316 and #1340, and supersedes #1387