Changed MPI version (#505) #2008
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| --- | |
| name: CI pipeline for pySDC | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '1 5 * * 1' | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| env: | |
| YML: 'etc/environment-lint.yml' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ env.YML }} | |
| create-args: >- | |
| python=3.12 | |
| - name: Code reformatting with black | |
| run: | | |
| black pySDC --check --diff --color | |
| - name: Linting with ruff | |
| run: | | |
| ruff check pySDC | |
| user_cpu_tests_linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: ['base', 'fenics', 'mpi4py', 'petsc', 'pytorch'] | |
| python: ['3.9', '3.10', '3.11', '3.12'] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "etc/environment-${{ matrix.env }}.yml" | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| - name: Install additional packages as needed | |
| run: | | |
| micromamba install -y --file etc/environment-tests.yml --freeze-installed | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/tests -m ${{ matrix.env }} | |
| - name: Make coverage report | |
| run: | | |
| coverage combine | |
| mv .coverage coverage_${{ matrix.env }}.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: matrix.python == '3.12' | |
| with: | |
| name: test-artifacts-cpu-${{ matrix.env }} | |
| path: | | |
| data | |
| coverage_${{ matrix.env }}.dat | |
| project_cpu_tests_linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: | |
| - AllenCahn_Bayreuth | |
| - AsympConv | |
| - DAE | |
| - FastWaveSlowWave | |
| - Hamiltonian | |
| - matrixPFASST | |
| - parallelSDC | |
| - parallelSDC_reloaded | |
| - PinTSimE | |
| - RDC | |
| - Resilience | |
| - SDC_showdown | |
| - Second_orderSDC | |
| - soft_failure | |
| - TOMS | |
| python: ['3.9', '3.10', '3.11', '3.12'] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "pySDC/projects/${{ matrix.env }}/environment.yml" | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| - name: Install additional packages as needed | |
| run: | | |
| micromamba install -y --file etc/environment-tests.yml --freeze-installed | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/${{ matrix.env }}/tests | |
| - name: Make coverage report | |
| run: | | |
| coverage combine | |
| mv .coverage coverage_${{ matrix.env }}.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: matrix.python == '3.12' | |
| with: | |
| name: test-artifacts-project-${{ matrix.env }} | |
| path: | | |
| data | |
| coverage_${{ matrix.env }}.dat | |
| user_libpressio_tests: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: brownbaerchen/libpressio:amd64_2 | |
| volumes: | |
| - ${{ github.workspace }}:/pySDC | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install pySDC and pytest | |
| run: | | |
| source /pySDC/pySDC/projects/compression/Docker/install_pySDC.sh | |
| - name: Run pytest | |
| run: | | |
| source /opt/spack/share/spack/setup-env.sh | |
| spack load libpressio | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/compression/tests -m libpressio | |
| - name: Make coverage report | |
| run: | | |
| source /opt/spack/share/spack/setup-env.sh | |
| spack load libpressio | |
| mv data data_libpressio | |
| coverage combine | |
| mv .coverage coverage_libpressio.dat | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-artifacts-libpressio | |
| path: | | |
| data_libpressio | |
| coverage_libpressio.dat | |
| user_monodomain_tests_linux: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "pySDC/projects/Monodomain/etc/environment-monodomain.yml" | |
| create-args: >- | |
| python=3.12 | |
| - name: Compile C++ ionic models | |
| env: | |
| IONIC_MODELS_PATH: "pySDC/projects/Monodomain/problem_classes/ionicmodels/cpp" | |
| run: > | |
| c++ -O3 -Wall -shared -std=c++11 -fPIC -fvisibility=hidden | |
| $(python3 -m pybind11 --includes) | |
| ${IONIC_MODELS_PATH}/bindings_definitions.cpp | |
| -o ${IONIC_MODELS_PATH}/ionicmodels$(python3-config --extension-suffix) | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/Monodomain/tests -m monodomain | |
| - name: Make coverage report | |
| run: | | |
| mv data data_monodomain | |
| coverage combine | |
| mv .coverage coverage_monodomain.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-artifacts-monodomain | |
| path: | | |
| data_monodomain | |
| coverage_monodomain.dat |