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PNNL-CompBio
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perseq
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perseq
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Commits on Nov 20, 2018
fixes bug when renaming prodigal output
Joe Brown
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2494411
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fixes multiple translations per sequence
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68b8478
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updates tab
nzavoshy
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4b6d993
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Commits on Nov 12, 2018
updated summary tables
nzavoshy
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4e7999f
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Commits on Nov 7, 2018
building tables
nzavoshy
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09ccd74
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Commits on Nov 2, 2018
renames kaiju output file
Joe Brown
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8339437
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Commits on Nov 1, 2018
fixes samples output
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152a4ae
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adds samples output definitions
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e3e657a
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removes sample echo
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b65e1e3
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increase sort's buffer size
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ab90cb7
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Commits on Oct 31, 2018
adds hmm searches (#15)
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brwnj
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3196e2e
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Commits on Sep 24, 2018
increases default value for contaminant matches
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1bd79fa
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cleans up arguments to build_report
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35d00e3
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Commits on Sep 20, 2018
adds minor reformatting
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72a158a
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fixes bug in get_merge_input
Joe Brown
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4a6f16f
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updates merge_sequences input
Joe Brown
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94156fa
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Commits on Sep 19, 2018
updates subsample, conda envs, and merge input
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0369320
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updates line spacing
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0b4ea42
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removes download from workflow
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5d33a0f
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Commits on Aug 20, 2018
fixed fixmes
nzavoshy
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31c28d1
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fixed fixmes
nzavoshy
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0a25809
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Commits on Aug 17, 2018
updated Snakefile params
nzavoshy
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417ed55
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pushes breaking code
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dfb4970
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Commits on Aug 15, 2018
Merge branch 'master' of https://github.com/PNNL-CompBio/perseq
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etc...
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qc_updates
nzavoshy
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f96bf2d
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quick_qc
nzavoshy
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355372a
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Commits on Aug 8, 2018
updated build_krona_ec_rule
nzavoshy
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c086f7e
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updates krona output location; changes cli option format for build_krona
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bbe1c61
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Commits on Aug 7, 2018
reformatted
nzavoshy
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c84dd2c
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updated build_report
nzavoshy
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e55bf0d
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Commits on Jul 17, 2018
fixes taxonomy order added by kaiju
Joe Brown
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a617384
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Commits on Jun 28, 2018
allows for multiple data directories to be specified
Joe Brown
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c9d38ce
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Finalizes workflow order and output columns (#10)
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Joe Brown
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a160760
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Commits on Jun 25, 2018
removes all duplicate sequences
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5173ef2
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