Multiple fixes for data inconsistencies across all datasets.

[jjacobson95]

Unfortunately, as the code for this is spread across all datasets, I did not have time to fully test all of these changes because I'd have to run the full build process (and I am leaving for 2 weeks today). The logic updates are relatively simple though and I think they should work, however there are quite a few of them so its possible an error slipped by, as such please review thoroughly.

Resolves #399, #395, model types have been corrected for mpnst, bladderpdo, crcpdo, hcmi, pancpdo, sarcpdo.

• organoid should now either be patient derived organoid or xenograft derived organoid
• changed Tumor-Biopsy to tumor model type instead of ex vivo in crcpdo. Did not have time to look into paper, please confirm if this is correct.

Resolves #405, #407, data files where genes that were not in the genes file have now been dropped:

• beataml_mutations.csv
• beataml_proteomics.csv
• beataml_transcriptomics.csv
• bladderpdo_copy_number.csv
• bladderpdo_mutations.csv
• ccle_mutations.csv
• cptac_copy_number.csv
• cptac_mutations.csv
• cptac_proteomics.csv
• cptac_transcriptomics.csv
• ctrpv2_mutations.csv
• fimm_mutations.csv
• gcsi_mutations.csv
• hcmi_mutations.csv
• nci60_mutations.csv
• prism_mutations.csv

Resolves #408, data files where float has been converted to int for entrez_id or improve_sample_id:

• ccle_experiments.tsv
• ctrpv2_experiments.tsv
• fimm_experiments.tsv
• gcsi_experiments.tsv
• gdscv1_experiments.tsv
• gdscv2_experiments.tsv
• nci60_experiments.tsv
• prism_experiments.tsv
• sarcpdo_mutations.csv
• sarcpdo_transcriptomics.csv

Resolves #393, #392 and fills in blanks in cancer_type with Normal Tissue for PancPDO and HCMI.

Resolves #396, All depmap datasets will now be in the correct TPM scale.