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<code>Dataset.genes</code> not "dataset specific"

bugSomething isn't workingSomething isn't working

package

Status: Closed (completed).

Bug

#304 In PNNL-CompBio/coderdata;

· by ymahlich was closed on Jun 25, 2025

CoderData Package needs Checksum for Download Function

bugSomething isn't workingSomething isn't working

package

Status: Closed (completed).

#391 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jun 25, 2025

Add in PDO data from CRC organoids

new dataRequest for additional data to be addedRequest for additional data to be added

Status: Closed (completed).

#264 In PNNL-CompBio/coderdata;

· by sgosline was closed on May 21, 2025

NovartisPDX - Samples

Status: Closed (completed).

#374 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on May 21, 2025

NovartisPDX - Copy Number

Status: Closed (completed).

#376 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on May 21, 2025

NovartisPDX - RNAseq

Status: Closed (completed).

#377 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on May 21, 2025

Build_dataset.py not always validating data correctly

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#370 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on May 8, 2025

sarcpdo drug response is missing time, time_unit

bugSomething isn't workingSomething isn't working

data update

Status: Closed (completed).

#366 In PNNL-CompBio/coderdata;

· by ymahlich was closed on May 21, 2025

BladderPDO copy number file written to bladderpdo_copynumber

'build' update

bugSomething isn't workingSomething isn't working

data update

Status: Closed (completed).

#358 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on May 21, 2025

bladder pdo transcriptomics table not formatted correctly

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#360 In PNNL-CompBio/coderdata;

· by ymahlich was closed on May 21, 2025

crc_organoids drug data

Status: Closed (completed).

#348 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on Apr 9, 2025

crc_organoids experiment data

Status: Closed (completed).

#349 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on Apr 18, 2025

dockerize crc_organoids

Status: Closed (completed).

#350 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on Apr 22, 2025

faulty improve drug id in nci60 drug descriptor file

'build' update

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#362 In PNNL-CompBio/coderdata;

· by ymahlich was closed on May 8, 2025

fix to improve wrapper script

bugSomething isn't workingSomething isn't working

package

Status: Closed (completed).

#361 In PNNL-CompBio/coderdata;

· by ymahlich was closed on Apr 24, 2025

sarcpdo missing many organoids

'build' update

bugSomething isn't workingSomething isn't working

data update

Status: Closed (completed).

#367 In PNNL-CompBio/coderdata;

· by sgosline was closed on May 21, 2025

Multiple issues with curve fitting code

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#398 In PNNL-CompBio/coderdata;

· by sgosline was closed on Jun 18, 2025

Bug in YAML schema for drug combination

'build' update

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#357 In PNNL-CompBio/coderdata;

· by sgosline was closed on May 8, 2025

Clarify Organoid across all Datasets

data update

Status: Closed (completed).

#395 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

Update MPNST dataset model type

data update

Status: Closed (completed).

#399 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

Some HCMI Samples are missing cancer type

data update

Status: Closed (completed).

#393 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

Ensure all datasets convert all floats to ints (where applicable)

data update

Status: Closed (completed).

#408 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

DepMap Transcriptomics Values are not scaled correctly.

bugSomething isn't workingSomething isn't working

data update

Status: Closed (completed).

Bug

#396 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

Many Datasets Include Genes that are not in genes.csv

data update

Status: Closed (completed).

#407 In PNNL-CompBio/coderdata;

· by jjacobson95 was closed on Jul 7, 2025

LiverPDO - RNAseq

Status: Closed (completed).

#385 In PNNL-CompBio/coderdata;

· by alexandriai168 was closed on Jun 18, 2025