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pass drug_descriptors (contains mordred descriptors) to consecutive build runs for datasets

'build' update

bugSomething isn't workingSomething isn't working

data update

Status: Open.

#323 In PNNL-CompBio/coderdata;

· ymahlich opened on Feb 5, 2025

MPNST PDX build does not work without drug file

bugSomething isn't workingSomething isn't working

Status: Open.

#258 In PNNL-CompBio/coderdata;

· sgosline opened on Dec 4, 2024

Remove 2-009 PDX from coderdata

'build' update

data update

Status: Open.

#356 In PNNL-CompBio/coderdata;

· sgosline opened on Apr 14, 2025

Import Novartis/CDPM PDX data into Coderdata

new dataRequest for additional data to be addedRequest for additional data to be added

Status: Open.

#335 In PNNL-CompBio/coderdata;

· sgosline opened on Mar 25, 2025

Add liver organoid omics and drug response data

new dataRequest for additional data to be addedRequest for additional data to be added

Status: Open.

#371 In PNNL-CompBio/coderdata;

· sgosline opened on Apr 30, 2025

NovartisPDX - Mutations

Status: Open.

#375 In PNNL-CompBio/coderdata;

· alexandriai168 opened on May 1, 2025

NovartisPDX - Drug Data

Status: Open.

#378 In PNNL-CompBio/coderdata;

· alexandriai168 opened on May 1, 2025

NovartisPDX - Experiments

Status: Open.

#379 In PNNL-CompBio/coderdata;

· alexandriai168 opened on May 1, 2025

LiverPDO - Experiments

Status: Open.

#388 In PNNL-CompBio/coderdata;

· alexandriai168 opened on May 21, 2025

DepMap Transcriptomics Values are not scaled correctly.

bugSomething isn't workingSomething isn't working

data update

Status: Open.

Bug

#396 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 6, 2025

HCMI and CPTAC Transcriptomics need to be re-evaluated

bugSomething isn't workingSomething isn't working

data update

Status: Open.

Bug

#397 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 6, 2025

Clarify Organoid across all Datasets

data update

Status: Open.

#395 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 6, 2025

Some HCMI Samples are missing cancer type

data update

Status: Open.

#393 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 6, 2025

Update MPNST dataset model type

data update

Status: Open.

#399 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 11, 2025

Consider methods to annotate 'adjacent normal' tissue

data update

enhancementNew feature or requestNew feature or request

Status: Open.

#369 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Apr 30, 2025

collapse MPNST datasets, move to end of build process

Status: Open.

#400 In PNNL-CompBio/coderdata;

· sgosline opened on Jun 11, 2025

Many Datasets Include Genes that are not in genes.csv

data update

Status: Open.

#407 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 25, 2025

Ensure all datasets convert all floats to ints (where applicable)

data update

Status: Open.

#408 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 25, 2025

HCMI Files redacted - new manifest file

Status: Open.

#409 In PNNL-CompBio/coderdata;

· jjacobson95 opened on Jun 26, 2025