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Bump minimum nextflow version to 23.10.0 (#297)
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* Update nextflow.config

* Update README.md

* Update standard-test.yml

* Update changelog.rst

* Update README.md

* Update standard-test.yml
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nebfield authored May 24, 2024
1 parent 822e517 commit 0198033
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4 changes: 2 additions & 2 deletions .github/workflows/standard-test.yml
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Expand Up @@ -25,7 +25,7 @@ jobs:
matrix:
test_profile: ["test"]
profile: ["docker"]
nxf_ver: ['22.10.0', 'latest']
nxf_ver: ['23.10.0', 'latest']

steps:
- name: Extract branch name
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matrix:
test_profile: ["test"]
profile: ["singularity"]
nxf_ver: ['22.10.0', 'latest']
nxf_ver: ['23.10.0', 'latest']

steps:
- name: Extract branch name
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -4,7 +4,7 @@
[![pgscatalog/pgsc_calc CI](https://github.com/PGScatalog/pgsc_calc/actions/workflows/ci.yml/badge.svg)](https://github.com/PGScatalog/pgsc_calc/actions/workflows/ci.yml)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5970794.svg)](https://doi.org/10.5281/zenodo.5970794)

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-≥22.10.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-≥23.10.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
Expand Down Expand Up @@ -44,7 +44,7 @@ See documentation for a list of planned [features under development](https://pgs

1. Install
[`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation)
(`>=22.10.0`)
(`>=23.10.0`)

2. Install [`Docker`](https://docs.docker.com/engine/installation/) or
[`Singularity (v3.8.3 minimum)`](https://www.sylabs.io/guides/3.0/user-guide/)
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2 changes: 2 additions & 0 deletions docs/changelog.rst
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Expand Up @@ -11,6 +11,8 @@ will only occur in major versions with changes noted in this changelog.
pgsc_calc v2.0.0-alpha.6 (2024-05-24)
-------------------------------------

Please note the minimum required nextflow version has been updated to v23.10.0, released in October 2023.

Improvements

* Migrate our custom python tools to new https://github.com/PGScatalog/pygscatalog packages
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -269,7 +269,7 @@ manifest {
homePage = 'https://github.com/pgscatalog/pgsc_calc'
description = 'The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation'
mainScript = 'main.nf'
nextflowVersion = '>=22.10.0'
nextflowVersion = '>=23.10.0'
version = '2.0.0-alpha.6'
}

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