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Merged
dweindl merged 3 commits into from
Jul 18, 2023
Merged

Release 0.2.3 #216

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25ee7aa
Fix missing inplace=True in validation of visualization tables (#214)
dweindl Jul 17, 2023
b02d768
Make validate_visualization_df work without matplotlib installation (…
dweindl Jul 17, 2023
5c052f1
Release 0.2.3
dweindl Jul 18, 2023
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13 changes: 13 additions & 0 deletions CHANGELOG.md
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## 0.2 series

### 0.2.3

* Fixed validation failures in case of missing optional fields in visualization tables
by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/214
* Make validate_visualization_df work without matplotlib installation
by @dweindl @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/215

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.2...v0.2.3

### 0.2.2

* Fixed IndexError with numpy 1.25.0 by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/209
* Made `SbmlModel.from_file(..., model_id)` optional by @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/207

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.1...v0.2.2

### 0.2.1

Fixes:
* Fixed an issue in `Problem.to_files(model_file=...)` (#204)
* Fixed `PySBModel.get_parameter_value`, which incorrectly returned the parameter name instead of its value (#203)

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.0...v0.2.1

### 0.2.0

Note: petab 0.2.0 requires Python>=3.9
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2 changes: 1 addition & 1 deletion petab/version.py
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@@ -1,2 +1,2 @@
"""PEtab library version"""
__version__ = '0.2.2'
__version__ = '0.2.3'
34 changes: 21 additions & 13 deletions petab/visualize/__init__.py
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Expand Up @@ -6,24 +6,32 @@
``import petab.visualize``.

"""
import importlib.util

from .plot_data_and_simulation import (
plot_without_vis_spec,
plot_with_vis_spec,
plot_problem,
)
mpl_spec = importlib.util.find_spec("matplotlib")

from .plot_residuals import plot_goodness_of_fit, plot_residuals_vs_simulation
from .plotter import MPLPlotter
from .plotting import DataProvider, Figure

__all__ = [
"plot_without_vis_spec",
"plot_with_vis_spec",
"plot_problem",
"plot_goodness_of_fit",
"plot_residuals_vs_simulation",
"MPLPlotter",
"DataProvider",
"Figure"
]

if mpl_spec is not None:
from .plot_data_and_simulation import (
plot_without_vis_spec,
plot_with_vis_spec,
plot_problem,
)

from .plot_residuals import plot_goodness_of_fit, plot_residuals_vs_simulation
from .plotter import MPLPlotter

__all__.extend([
"plot_without_vis_spec",
"plot_with_vis_spec",
"plot_problem",
"plot_goodness_of_fit",
"plot_residuals_vs_simulation",
"MPLPlotter",
])
2 changes: 1 addition & 1 deletion petab/visualize/lint.py
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Expand Up @@ -124,7 +124,7 @@ def set_default(column: str, value):
if column not in vis_df:
vis_df[column] = value
elif value is not None:
vis_df[column].fillna(value)
vis_df[column].fillna(value, inplace=True)

set_default(C.PLOT_NAME, "")
set_default(C.PLOT_TYPE_SIMULATION, C.LINE_PLOT)
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