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Fix IndexError during test_visualization_with__t_inf #209

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Merged
dweindl merged 2 commits into from
Jun 20, 2023
Merged

Fix IndexError during test_visualization_with__t_inf #209

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Fix IndexError during test_visualization_with__t_inf
dweindl Jun 20, 2023
1e83a42
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dweindl Jun 20, 2023
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6 changes: 6 additions & 0 deletions petab/visualize/plotter.py
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Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,8 @@ def generate_lineplot(
if plotTypeData == REPLICATE:
replicates = np.stack(
measurements_to_plot.data_to_plot.repl.values)
if replicates.ndim == 1:
replicates = np.expand_dims(replicates, axis=1)

# plot first replicate
p = ax.plot(
Expand Down Expand Up @@ -544,6 +546,8 @@ def _line_plot_at_t_inf(
p = None
if plotTypeData == REPLICATE:
replicates = measurements_data_to_plot_inf.repl
if replicates.ndim == 0:
replicates = np.expand_dims(replicates, axis=0)

# plot first replicate
p = ax_inf.plot(
Expand Down Expand Up @@ -587,6 +591,8 @@ def _line_plot_at_t_inf(

if plotTypeData == REPLICATE:
replicates = simulations_data_to_plot_inf.repl
if replicates.ndim == 0:
replicates = np.expand_dims(replicates, axis=0)

# plot first replicate
p = ax_inf.plot(
Expand Down