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Add PySBModel for handling of PySB models #145

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Mar 9, 2023
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Use tentative multilanguage schema
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dweindl committed Jul 19, 2022
commit b59105856334879a52ffa63db04258e8c75d19a0
35 changes: 26 additions & 9 deletions petab/schemas/petab_schema.v2.0.0.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -38,13 +38,26 @@ properties:
files and optional visualization files.
properties:

sbml_files:
type: array
description: List of PEtab SBML files.

items:
type: string
description: PEtab SBML file name or URL.
model_files:
type: object
description: One or multiple models

# the model ID
patternProperties:
"^[a-zA-Z_]\\w*$":
type: object
properties:
location:
type: string
description: Model file name or URL
language:
type: string
description: |
Model language, e.g., 'sbml', 'cellml', 'bngl', 'pysb'
required:
- location
- language
additionalProperties: false

measurement_files:
type: array
Expand Down Expand Up @@ -78,8 +91,12 @@ properties:
type: string
description: PEtab visualization file name or URL.

mapping_file:
type: string
description: Optional PEtab mapping file name or URL.

required:
- sbml_files
- model_files
- observable_files
- measurement_files
- condition_files
Expand Down Expand Up @@ -108,4 +125,4 @@ properties:
required:
- format_version
- parameter_file
- problems
- problems