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plakrisenkodweindl
plakrisenko
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dweindl
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Plot measurements for t = 'inf' (#149)
* plotting at t = inf, draft * move plotting values at t_inf to a separate method * add vertical dashed lines and horisontal lines to inf data points * plot simulations w inf and calculate split axes parameters based on all data to plot * plot with only t = inf * plotting steady-state measurements with replicates * add tests * docstrings Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
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‎doc/example/example_Fujita/Fujita_measurementData_t_inf.tsv‎

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observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters datasetId
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pS6_tot model1_data1 0 0 scaling_pS6_tot 0.01 model1_data1_pS6_tot
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pS6_tot model1_data1 0.0018563 60 scaling_pS6_tot 0.01 model1_data1_pS6_tot
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pS6_tot model1_data1 0.0033416 120 scaling_pS6_tot 0.01 model1_data1_pS6_tot
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pS6_tot model1_data1 0.012632 300 scaling_pS6_tot 0.01 model1_data1_pS6_tot
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pS6_tot model1_data1 0.078914 600 scaling_pS6_tot 0.02 model1_data1_pS6_tot
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pS6_tot model1_data1 0.25521 900 scaling_pS6_tot 0.02 model1_data1_pS6_tot
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pS6_tot model1_data1 0.44745 1800 scaling_pS6_tot 0.035 model1_data1_pS6_tot
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pS6_tot model1_data1 0.29547 inf scaling_pS6_tot 0.035 model1_data1_pS6_tot
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pS6_tot model1_data2 0 0 scaling_pS6_tot 0.01 model1_data2_pS6_tot
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pS6_tot model1_data2 0.0019654 60 scaling_pS6_tot 0.01 model1_data2_pS6_tot
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pS6_tot model1_data2 0.0021975 120 scaling_pS6_tot 0.01 model1_data2_pS6_tot
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pS6_tot model1_data2 0.020119 300 scaling_pS6_tot 0.01 model1_data2_pS6_tot
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pS6_tot model1_data2 0.22158 600 scaling_pS6_tot 0.02 model1_data2_pS6_tot
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pS6_tot model1_data2 0.52331 900 scaling_pS6_tot 0.03 model1_data2_pS6_tot
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pS6_tot model1_data2 0.85846 1800 scaling_pS6_tot 0.1 model1_data2_pS6_tot
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pS6_tot model1_data2 0.6598 inf scaling_pS6_tot 0.025 model1_data2_pS6_tot
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pS6_tot model1_data3 0 0 scaling_pS6_tot 0.01 model1_data3_pS6_tot
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pS6_tot model1_data3 0.0020839 60 scaling_pS6_tot 0.01 model1_data3_pS6_tot
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pS6_tot model1_data3 0.0047955 120 scaling_pS6_tot 0.01 model1_data3_pS6_tot
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pS6_tot model1_data3 0.047495 300 scaling_pS6_tot 0.01 model1_data3_pS6_tot
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pS6_tot model1_data3 0.39197 600 scaling_pS6_tot 0.01 model1_data3_pS6_tot
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pS6_tot model1_data3 0.68142 900 scaling_pS6_tot 0.025 model1_data3_pS6_tot
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pS6_tot model1_data3 1.0001 1800 scaling_pS6_tot 0.07 model1_data3_pS6_tot
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pS6_tot model1_data3 0.75108 inf scaling_pS6_tot 0.075 model1_data3_pS6_tot
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pS6_tot model1_data4 0 0 scaling_pS6_tot 0.01 model1_data4_pS6_tot
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pS6_tot model1_data4 0.0057189 60 scaling_pS6_tot 0.01 model1_data4_pS6_tot
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pS6_tot model1_data4 0.013126 120 scaling_pS6_tot 0.01 model1_data4_pS6_tot
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pS6_tot model1_data4 0.062408 300 scaling_pS6_tot 0.01 model1_data4_pS6_tot
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pS6_tot model1_data4 0.41154 600 scaling_pS6_tot 0.01 model1_data4_pS6_tot
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pS6_tot model1_data4 0.71428 900 scaling_pS6_tot 0.035 model1_data4_pS6_tot
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pS6_tot model1_data4 0.92784 1800 scaling_pS6_tot 0.08 model1_data4_pS6_tot
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pS6_tot model1_data4 0.55064 inf scaling_pS6_tot 0.08 model1_data4_pS6_tot
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pS6_tot model1_data5 0 0 scaling_pS6_tot 0.01 model1_data5_pS6_tot
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pS6_tot model1_data5 0.0073292 60 scaling_pS6_tot 0.01 model1_data5_pS6_tot
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pS6_tot model1_data5 0.014418 120 scaling_pS6_tot 0.01 model1_data5_pS6_tot
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pS6_tot model1_data5 0.079732 300 scaling_pS6_tot 0.01 model1_data5_pS6_tot
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pS6_tot model1_data5 0.4562 600 scaling_pS6_tot 0.01 model1_data5_pS6_tot
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pS6_tot model1_data5 0.65294 900 scaling_pS6_tot 0.02 model1_data5_pS6_tot
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pS6_tot model1_data5 0.75189 1800 scaling_pS6_tot 0.04 model1_data5_pS6_tot
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pS6_tot model1_data5 0.37446 inf scaling_pS6_tot 0.08 model1_data5_pS6_tot
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pS6_tot model1_data6 0 0 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.0086144 60 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.013062 120 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.07993 300 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.42868 600 scaling_pS6_tot 0.02 model1_data6_pS6_tot
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pS6_tot model1_data6 0.60508 900 scaling_pS6_tot 0.03 model1_data6_pS6_tot
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pS6_tot model1_data6 0.62088 1800 scaling_pS6_tot 0.035 model1_data6_pS6_tot
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pS6_tot model1_data6 0.32084 inf scaling_pS6_tot 0.07 model1_data6_pS6_tot
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pS6_tot model1_data6 0 0 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.009 60 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.01 120 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.05 300 scaling_pS6_tot 0.01 model1_data6_pS6_tot
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pS6_tot model1_data6 0.6 600 scaling_pS6_tot 0.02 model1_data6_pS6_tot
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pS6_tot model1_data6 0.4 900 scaling_pS6_tot 0.03 model1_data6_pS6_tot
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pS6_tot model1_data6 0.83 1800 scaling_pS6_tot 0.035 model1_data6_pS6_tot
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pS6_tot model1_data6 0.2 inf scaling_pS6_tot 0.07 model1_data6_pS6_tot

‎doc/example/example_Fujita/Fujita_simulatedData_t_inf.tsv‎

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observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters
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pS6_tot model1_data1 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data1 5.78895984805857E-05 60 scaling_pS6_tot 0.01
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pS6_tot model1_data1 0.0009531255 120 scaling_pS6_tot 0.01
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pS6_tot model1_data1 0.0185497283 300 scaling_pS6_tot 0.01
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pS6_tot model1_data1 0.0927501675 600 scaling_pS6_tot 0.02
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pS6_tot model1_data1 0.1859892615 900 scaling_pS6_tot 0.02
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pS6_tot model1_data1 0.3842285889 1800 scaling_pS6_tot 0.035
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pS6_tot model1_data1 0.3671651134 inf scaling_pS6_tot 0.035
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pS6_tot model1_data2 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data2 0.0001694707 60 scaling_pS6_tot 0.01
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pS6_tot model1_data2 0.0026563935 120 scaling_pS6_tot 0.01
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pS6_tot model1_data2 0.045833771 300 scaling_pS6_tot 0.01
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pS6_tot model1_data2 0.209607514 600 scaling_pS6_tot 0.02
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pS6_tot model1_data2 0.4007484657 900 scaling_pS6_tot 0.03
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pS6_tot model1_data2 0.7556316274 1800 scaling_pS6_tot 0.1
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pS6_tot model1_data2 0.6612775029 inf scaling_pS6_tot 0.025
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pS6_tot model1_data3 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data3 0.0005211244 60 scaling_pS6_tot 0.01
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pS6_tot model1_data3 0.007106942 120 scaling_pS6_tot 0.01
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pS6_tot model1_data3 0.0945320284 300 scaling_pS6_tot 0.01
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pS6_tot model1_data3 0.366852041 600 scaling_pS6_tot 0.01
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pS6_tot model1_data3 0.6350909024 900 scaling_pS6_tot 0.025
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pS6_tot model1_data3 0.9989387811 1800 scaling_pS6_tot 0.07
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pS6_tot model1_data3 0.7818807584 inf scaling_pS6_tot 0.075
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pS6_tot model1_data4 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data4 0.001284326 60 scaling_pS6_tot 0.01
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pS6_tot model1_data4 0.0137701475 120 scaling_pS6_tot 0.01
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pS6_tot model1_data4 0.1357831768 300 scaling_pS6_tot 0.01
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pS6_tot model1_data4 0.4317319675 600 scaling_pS6_tot 0.01
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pS6_tot model1_data4 0.6581119566 900 scaling_pS6_tot 0.035
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pS6_tot model1_data4 0.8936164338 1800 scaling_pS6_tot 0.08
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pS6_tot model1_data4 0.6665565723 inf scaling_pS6_tot 0.08
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pS6_tot model1_data5 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data5 0.0026774961 60 scaling_pS6_tot 0.01
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pS6_tot model1_data5 0.0210783997 120 scaling_pS6_tot 0.01
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pS6_tot model1_data5 0.1570157565 300 scaling_pS6_tot 0.01
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pS6_tot model1_data5 0.4117751573 600 scaling_pS6_tot 0.01
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pS6_tot model1_data5 0.5823970015 900 scaling_pS6_tot 0.02
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pS6_tot model1_data5 0.7468131737 1800 scaling_pS6_tot 0.04
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pS6_tot model1_data5 0.5504628923 inf scaling_pS6_tot 0.08
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pS6_tot model1_data6 0 0 scaling_pS6_tot 0.01
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pS6_tot model1_data6 0.0039799398 60 scaling_pS6_tot 0.01
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pS6_tot model1_data6 0.0254606658 120 scaling_pS6_tot 0.01
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pS6_tot model1_data6 0.1631478226 300 scaling_pS6_tot 0.01
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pS6_tot model1_data6 0.4009703836 600 scaling_pS6_tot 0.02
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pS6_tot model1_data6 0.5574326493 900 scaling_pS6_tot 0.03
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pS6_tot model1_data6 0.7058108511 1800 scaling_pS6_tot 0.035
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pS6_tot model1_data6 0.5194180219 inf scaling_pS6_tot 0.07

‎doc/example/example_Fujita/visuSpecs/Fujita_visuSpec_replicates.tsv‎

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plotId xValues yValues yOffset yScale plotName plotTypeSimulation plotTypeData
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plot1 time pS6_tot 0 lin pS6 total LinePlot replicate

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