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Develop#284

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LeonardSchmiester merged 32 commits intofeature_sedmlPEtab-dev/PEtab:feature_sedmlfrom developPEtab-dev/PEtab:developCopy head branch name to clipboardFeb 11, 2020

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Commits

Commits on Jan 20, 2020

• Add pylint config

  dweindl

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• Fixes ys (#237)

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  yannikschaelte

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Commits on Jan 21, 2020

• Parameter mapping should include all model parameters (#235)

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  dweindl

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Commits on Jan 22, 2020

• Allow initial concentrations / sizes in condition table (#238)

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  dweindl

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  LeonardSchmiester

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Commits on Jan 23, 2020

• Barplots and Replicates with Simulation data (#214)

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  MerktSimon

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  dweindl

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Commits on Jan 24, 2020

• Cleanup visualization (#240)

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  dweindl

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Commits on Jan 28, 2020

• Observables table instead of SBML assignment rules (#244)

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  dweindl

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• Release 0.1.0; file format version 1

  dweindl

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Commits on Jan 29, 2020

• Merge pull request #248 from ICB-DCM/release_0.1.0

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  dweindl

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Commits on Jan 30, 2020

• Fix parameter mapping: include output parameters not present in SBML model

  dweindl

  committed
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• Add convenience functions to petab.Problem

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  dweindl

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• Fix petab/petab_schema.yaml missing in pypi package

  dweindl

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• Update pylint ignorelist

  dweindl

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• Update README

  dweindl

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Commits on Jan 31, 2020

• Remove obsolete functions

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  dweindl

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Commits on Feb 1, 2020

• Let get_placeholders return an (ordered) list of placeholders

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  dweindl

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• Add check for valid identifiers (Closes #179) (#253)

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  dweindl

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  plakrisenko

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Commits on Feb 3, 2020

• Deprecate petab.problem.from_folder (Closes #245)

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  dweindl

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• Release 0.1.1

  dweindl

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• Merge pull request #254 from ICB-DCM/release_0.1.1

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  dweindl

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Commits on Feb 6, 2020

• Barplot uniform coloring & yScale=log fix #196 (#255)

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  MerktSimon

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• allow to extract only estimate parameters (#256)

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  yannikschaelte

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• Visu callobs par (#262)

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  LaraFuhrmann

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• Fix handling of numeric observable/noiseFormula in observable table (Fixes #264)

  dweindl

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Commits on Feb 7, 2020

• Add properties for fixed/free and scaled values (#268)

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  yannikschaelte

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  dweindl

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• Observables function (#269)

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  yannikschaelte

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  dweindl

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Commits on Feb 8, 2020

• Fix documentation hierarchy

  dweindl

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Commits on Feb 10, 2020

• Add functions to get all of fixed|free, scaled parameter values (#273)

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  yannikschaelte

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  dweindl

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• Default column to look for simulation results should be 'simulation'

  dweindl

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• PEtab COMBINE archives (#271)

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  dweindl

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  b4137bd

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• Fix sbml_observables_to_table - got broken in eb5453

  dweindl

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  c091cb2

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• Increase test coverage (#278)

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  yannikschaelte

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  dweindl

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