Adding tests on eden

.github/workflows/omv-ci.yml

@@ -15,39 +15,39 @@ jobs:
       fail-fast: false
       matrix:
         python-version: [ 3.7, 3.9 ]
-        engine: [ jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_validate, jNeuroML_validatev1, Py_neuroConstruct ]
+        engine: [ jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_EDEN, jNeuroML_validate, jNeuroML_validatev1, Py_neuroConstruct ]
 
     steps:
     - uses: actions/checkout@v2
-    
+
     - name: Set up Python  ${{ matrix.python-version }}
       uses: actions/setup-python@v2
       with:
         python-version:  ${{ matrix.python-version }}
-        
+
     - name: Install OMV
       run: |
         pip install git+https://github.com/OpenSourceBrain/osb-model-validation
         pip install scipy sympy matplotlib cython pandas tables
-        
+
     - name: Make neuroConstruct synapses
       if: ${{ matrix.engine == 'Py_neuroConstruct' }}
       run: |
         omv install Py_neuroConstruct
         cd neuroConstruct/pythonScripts/netbuild/
         ./makeSyns.sh
-        
+
     - name: Run OMV tests on engine ${{ matrix.engine }}
       run: |
         omv all -V --engine=${{ matrix.engine }}
-     
+
     - name: Test more NetPyNE
       if: ${{ matrix.engine == 'jNeuroML_NetPyNE' }}
       run: |
           cd NeuroML2/test
           python LEMS_supbaskFigA2a_netpyne.py
-      
-      
+
+
     - name: OMV final version info
       run: |
         omv list -V # list installed engines

.gitignore

@@ -76,3 +76,6 @@ neuroConstruct/generatedNeuroML2/html
 /NeuroML2/pythonScripts/netbuild/*.gv.pdf
 /neuroConstruct/generatedNeuroML2/*.gv
 /neuroConstruct/generatedNeuroML2/*.gv.pdf
+*code.gen.c
+*code.gen.so
+*_eden.py

neuroConstruct/generatedNeuroML2/.test.jnmleden.omt

@@ -0,0 +1,17 @@
+# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+
+target: LEMS_Thalamocortical.xml
+engine: jNeuroML_EDEN
+mep: .test.mep
+experiments:
+  Current clamp:
+    observables:
+      spike times:
+        file:
+          path: CG_CML_0.0.dat
+          columns: [0,1]
+          scaling: [1, 1]
+        spike detection:
+          method: threshold
+          threshold: 0
+        tolerance: 0.0007431995540690988

neuroConstruct/generatedNeuroML2/.test.soma.jnmleden.omt

@@ -0,0 +1,17 @@
+# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+
+target: LEMS_SomaTest.xml
+engine: jNeuroML_EDEN
+mep: .test.soma.mep
+experiments:
+  Current clamp:
+    observables:
+      spike times:
+        file:
+          path: CG_tester_0.0.dat
+          columns: [0,1]
+          scaling: [1000, 1000]
+        spike detection:
+          method: threshold
+          threshold: 0
+        tolerance: 0.0009467738797742139