Updating target for metaquast: report.html not created when there are…

… not hits against NCBI Viral database
OpenOmics · Jul 28, 2023 · 72bcb86 · 72bcb86
1 parent 4337057
commit 72bcb86
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -121,7 +121,7 @@ rule all:
             name=samples
         ),
         expand(
-            join(workpath,"{name}","output","{name}_metaquast","report.html"),
+            join(workpath,"{name}","output","{name}_metaquast","metaquast.log"),
             name=samples
         ),
         # Krona, project-level multi-sample report

diff --git a/workflow/rules/paired-end.smk b/workflow/rules/paired-end.smk
@@ -790,7 +790,7 @@ rule metaquast:
         contigs=get_contigs_fasta,
         dep=join(workpath,"{name}","temp","{name}.metaquast.fa"),
     output:
-        report=join(workpath,"{name}","output","{name}_metaquast","report.html")
+        log=join(workpath,"{name}","output","{name}_metaquast","metaquast.log"),
     params:
         rname='metaq',
         ref=join(workpath,"{name}","temp","metaquastref"),