Adding Dockerfile for ncbi-blast+

docker/blast/Dockerfile

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+# Base image for blast/2.12.0,
+# uses Ubuntu Jammy (LTS)
+FROM ubuntu:22.04
+
+# Depedencies of ncbi-blast+/2.12.0:
+#  - libbz2-1.0: high-quality block-sorting file compressor library
+#  - libc6 (>= 2.34): GNU C Library, shared libraries
+#  - libgcc-s1 (>= 3.3.1): GCC support library
+#  - libgcc-s1 (>= 3.4) [amd64]
+#  - libgomp1 (>= 6): GCC OpenMP (GOMP) support library
+#  - liblmdb0 (>= 0.9.7): Lightning memory-mapped database shared library
+#  - libmbedcrypto7 (>= 2.28.0): lightweight crypto and SSL/TLS library
+#  - libmbedtls14 (>= 2.28.0): lightweight crypto and SSL/TLS library
+#  - libpcre3: Old Perl 5 Compatible Regular Expression Library
+#  - libstdc++6 (>= 12): GNU Standard C++ Library v3
+#  - ncbi-data: Platform-independent data for the NCBI toolkit
+#  - perl: Larry Wall's Practical Extraction and Report Language
+#  - python3: Interactive high-level object-oriented language
+#  - zlib1g (>= 1:1.2.11): compression library 
+#  - t-coffee: Multiple Sequence Alignment
+
+LABEL maintainer="Skyler Kuhn <kuhnsa AT nih.gov>" \
+    base_image="ubuntu:22.04" \
+    version="v0.1.0"   \
+    software="blast" \
+    about.summary="Docker image for NCBI Blast+" \
+    about.home="https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/" \
+    about.documentation="https://blast.ncbi.nlm.nih.gov/Blast.cgi" \
+    about.tags="Genomics"
+
+############### INIT ################
+# Create Container filesystem specific 
+# working directory and opt directories
+# to avoid collisions with the host's
+# filesystem, i.e. /opt and /data
+RUN mkdir -p /opt2 && mkdir -p /data2
+WORKDIR /opt2 
+
+# Set time zone to US east coast 
+ENV TZ=America/New_York
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime \
+        && echo $TZ > /etc/timezone
+
+############### SETUP ################
+# This section installs system packages 
+# required for your project. If you need 
+# extra system packages add them here.
+RUN apt-get update \
+    && apt-get -y upgrade \
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y \
+        apt-transport-https \
+        autotools-dev \
+        automake \
+        autoconf \
+        build-essential \
+        ca-certificates \
+        cpanminus \
+        curl \
+        gawk \
+        git \
+        grep \
+        gzip \
+        locales \
+        unzip \
+        wget \
+        # Installs ncbi-blast+/2.12.0
+        ncbi-blast+=2.12.0+ds-3build1 \
+        python3 \
+        python3-pip \
+        unzip \
+        zlib1g-dev \
+    && apt-get clean && apt-get purge \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# Set the locale
+RUN localedef -i en_US -f UTF-8 en_US.UTF-8
+
+# Make python3 the default interpreter
+# and install Python Packages 
+# and install multiqc/1.14
+RUN ln -sf /usr/bin/python3 /usr/bin/python
+RUN pip3 install --upgrade pip \
+	&& pip3 install argparse \
+    && pip3 install matplotlib \
+    && pip3 install multiqc==1.14 \
+    && pip3 install pandas \
+    && pip3 install scipy
+
+# Perl fix issue
+RUN cpanm FindBin Term::ReadLine LWP::Simple
+
+############### INSTALL ################
+# Install any bioinformatics tools
+# available with apt-get on Ubuntu/22.04
+
+############### MANUAL ################
+# Install tools from src manually
+
+################ POST #################
+# Add Dockerfile and export environment 
+# variables and update permissions
+ADD Dockerfile /opt2/blast.dockerfile
+RUN chmod -R a+rX /opt2
+ENV PATH="/opt2:$PATH"
+WORKDIR /data2

docker/blast/README.md

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+## Steps for Building Docker Images
+
+Directly below are instructions for building an image using the provided Dockerfile:
+
+```bash
+# See listing of images on computer
+docker image ls
+
+# Build from Dockerfile
+docker build --no-cache -f Dockerfile --tag=blast:v0.1.0 .
+
+# Testing, take a peek inside
+docker run -ti blast:v0.1.0 /bin/bash
+
+# Updating Tag  before pushing to DockerHub
+docker tag blast:v0.1.0 skchronicles/blast:v0.1.0
+docker tag blast:v0.1.0 skchronicles/blast         # latest
+
+# Check out new tag(s)
+docker image ls
+
+# Push new tagged image to DockerHub
+docker push skchronicles/blast:v0.1.0
+docker push skchronicles/blast:latest
+```
+
+### Other Recommended Steps
+
+Scan your image for known vulnerabilities:
+
+```bash
+docker scan blast:v0.1.0
+```
+
+> **Please Note**: Any references to `skchronicles` should be replaced your username if you would also like to push the image to a non-org account.