chore(deps): Bump the datalad group in /services/datalad with 7 updates by dependabot[bot] · Pull Request #3700 · OpenNeuroOrg/openneuro

dependabot · 2026-01-01T13:24:46Z

Bumps the datalad group in /services/datalad with 7 updates:

Package	From	To
bidsschematools	`1.1.3`	`1.1.4`
boto3	`1.42.0`	`1.42.19`
pygit2	`1.19.0`	`1.19.1`
taskiq-redis	`1.1.2`	`1.2.1`
coverage	`7.12.0`	`7.13.1`
pytest	`9.0.1`	`9.0.2`
ruff	`0.14.7`	`0.14.10`

Updates bidsschematools from 1.1.3 to 1.1.4

Commits

5acf808 chore: Bump schema package to 1.1.4
40108fb test(bst): Narrow glossary validation test (#2284)
c65fe77 feat(bst): Defer type imports (#2269)
0f9b1f3 chore: Setup node after switching to JSR branch
83735b8 chore: Setup node to avoid thrashing lockfile
7ad62f4 chore: Install maintenance tools for publish_schema
545d4d2 chore: Bump schema package to 1.1.4-dev
See full diff in compare view

Updates boto3 from 1.42.0 to 1.42.19

Commits

98bf665 Merge branch 'release-1.42.19'
a86b3cf Bumping version to 1.42.19
a96980b Add changelog entries from botocore
3a1085f Remove elastictranscoder from documentation (#4686)
83130e5 Merge branch 'release-1.42.18'
2ad1b19 Merge branch 'release-1.42.18' into develop
56a53e6 Bumping version to 1.42.18
960d57e Add changelog entries from botocore
9a88f84 Merge branch 'release-1.42.17'
c302093 Merge branch 'release-1.42.17' into develop
Additional commits viewable in compare view

Updates pygit2 from 1.19.0 to 1.19.1

Changelog

Sourced from pygit2's changelog.

1.19.1 (2025-12-29)

Update wheels to libgit2 1.9.2 and OpenSSL 3.5

Fix: now diff's getitem/iter returns None for unchanged or binary files #1412

CI (macOS): arm, intel and pypy wheels (instead of universal) #1441

CI (pypy): fix tests #1437

Commits

7ee1ae5 Release 1.19.1
d610f77 CI: fixing build on Alpine
3ee2acc CI: fixing build of OpenSSL 3.5
60248b5 Update libgit2 and openssl
040a65a Update changelog
48e9fec test: skip tests for pypy wheel on MacOS arm64
890730c build(dev): build separate wheels for Mac OS architectures
6d8ca75 chore(CI): bump actions/checkout from 5 to 6 in the actions group
ec6e6ea refactor: organize dev-time dependencies
a4ec27e Update cibuildwheel
Additional commits viewable in compare view

Updates taskiq-redis from 1.1.2 to 1.2.1

Release notes

Sourced from taskiq-redis's releases.

1.2.1

What's Changed

Updated redis dependency. by @s3rius in taskiq-python/taskiq-redis#116

Added intervals support for redis list schedule source. by @s3rius in taskiq-python/taskiq-redis#117

Full Changelog: taskiq-python/taskiq-redis@1.2.0...1.2.1

1.2.0

What's Changed

Features

feat: update redis dependency to version 7 by @antoinehng in taskiq-python/taskiq-redis#106

feat: remove support for deprecated Python versions by @vldmrdev in taskiq-python/taskiq-redis#111

Misc

chore: update bitnami catalog to legacy version by @spikeninja in taskiq-python/taskiq-redis#103

chore: fix issues in ci by @danfimov in taskiq-python/taskiq-redis#112

chore: replace poetry with uv by @vldmrdev in taskiq-python/taskiq-redis#111

New Contributors

@antoinehng made their first contribution in taskiq-python/taskiq-redis#106

@danfimov made their first contribution in taskiq-python/taskiq-redis#112

@vldmrdev made their first contribution in taskiq-python/taskiq-redis#111

Full Changelog: taskiq-python/taskiq-redis@1.1.2...1.2.0

Commits

8bc1ed5 Added tests. (#117)
5de77c4 Updated redis dependency. (#116)
854053e Merge pull request #113 from taskiq-python/fix-trigger-for-release-pipeline
ee438b6 chore(ci): fix trigger for release pipeline
d303934 Merge pull request #111 from vldmrdev/108-remove-depricated-python-versions
4668ff2 chore(ci): change permissions for running tests in MRs
2c651a2 chore: revert some changes pyproject.toml
a695ba2 refactor: remove deprecated Python version and move to uv
834b03b Merge pull request #112 from taskiq-python/fix-issues-in-ci
ac1d78e chore: mute expected warning about RedisScheduleSource in tests
Additional commits viewable in compare view

Updates coverage from 7.12.0 to 7.13.1

Changelog

Sourced from coverage's changelog.

Version 7.13.1 — 2025-12-28

Added: the JSON report now includes a "start_line" key for function and class regions, indicating the first line of the region in the source. Closes issue 2110_.

Added: The debug data command now takes file names as arguments on the command line, so you can inspect specific data files without needing to set the COVERAGE_FILE environment variable.

Fix: the JSON report used to report module docstrings as executed lines, which no other report did, as described in issue 2105_. This is now fixed, thanks to Jianrong Zhao.

Fix: coverage.py uses a more disciplined approach to detecting where third-party code is installed, and avoids measuring it. This shouldn't change any behavior. If you find that it does, please get in touch.

Performance: data files that will be combined now record their hash as part of the file name. This lets us skip duplicate data more quickly, speeding the combining step.

Docs: added a section explaining more about what is considered a missing branch and how it is reported: :ref:branch_explain, as requested in issue 1597. Thanks to Ayisha Mohammed <pull 2092_>.

Tests: the test suite misunderstood what core was being tested if COVERAGE_CORE wasn't set on 3.14+. This is now fixed, closing issue 2109_.

.. _issue 1597: coveragepy/coveragepy#1597 .. _pull 2092: coveragepy/coveragepy#2092 .. _issue 2105: coveragepy/coveragepy#2105 .. _issue 2109: coveragepy/coveragepy#2109 .. _issue 2110: coveragepy/coveragepy#2110

.. _changes_7-13-0:

Version 7.13.0 — 2025-12-08

Feature: coverage.py now supports :file:.coveragerc.toml configuration files. These files use TOML syntax and take priority over :file:pyproject.toml but lower priority than :file:.coveragerc files. Closes issue 1643_ thanks to Olena Yefymenko <pull 1952_>_.

Fix: we now include a permanent .pth file which is installed with the code, fixing issue 2084_. In 7.12.1b1 this was done incorrectly: it didn't work when using the source wheel (py3-none-any). This is now fixed. Thanks,

... (truncated)

Commits

a6afdc3 docs: sample HTML for 7.13.1
a497081 docs: prep for 7.13.1
e992033 docs: polish up CHANGES
18bba6e chore: bump the action-dependencies group with 4 updates (#2111)
80fb808 refactor: (?x:...) lets us use re.VERBOSE even when combining later
cc272bd docs: leave a comment so we'll find this when 3.12 is the minimum
70d007d types: be explicit
a2c1940 types: fully import modules that will be patched
57b975d types: explicit Protocol inheritance permits changing parameter names
63ec12d types: clarify that morfs arguments can be a single morf
Additional commits viewable in compare view

Updates pytest from 9.0.1 to 9.0.2

Release notes

Sourced from pytest's releases.

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

#13896: The terminal progress feature added in pytest 9.0.0 has been disabled by default, except on Windows, due to compatibility issues with some terminal emulators.

You may enable it again by passing -p terminalprogress. We may enable it by default again once compatibility improves in the future.

Additionally, when the environment variable TERM is dumb, the escape codes are no longer emitted, even if the plugin is enabled.

#13904: Fixed the TOML type of the tmp_path_retention_count settings in the API reference from number to string.

#13946: The private config.inicfg attribute was changed in a breaking manner in pytest 9.0.0. Due to its usage in the ecosystem, it is now restored to working order using a compatibility shim. It will be deprecated in pytest 9.1 and removed in pytest 10.

#13965: Fixed quadratic-time behavior when handling unittest subtests in Python 3.10.

Improved documentation

#4492: The API Reference now contains cross-reference-able documentation of pytest's command-line flags <command-line-flags>.

Commits

3d10b51 Prepare release version 9.0.2
188750b Merge pull request #14030 from pytest-dev/patchback/backports/9.0.x/1e4b01d1f...
b7d7bef Merge pull request #14014 from bluetech/compat-note
bd08e85 Merge pull request #14013 from pytest-dev/patchback/backports/9.0.x/922b60377...
bc78386 Add CLI options reference documentation (#13930)
5a4e398 Fix docs typo (#14005) (#14008)
d7ae6df Merge pull request #14006 from pytest-dev/maintenance/update-plugin-list-tmpl...
556f6a2 pre-commit: fix rst-lint after new release (#13999) (#14001)
c60fbe6 Fix quadratic-time behavior when handling unittest subtests in Python 3.10 ...
73d9b01 Merge pull request #13995 from nicoddemus/patchback/backports/9.0.x/1b5200c0f...
Additional commits viewable in compare view

Updates ruff from 0.14.7 to 0.14.10

Release notes

Sourced from ruff's releases.

0.14.10

Release Notes

Released on 2025-12-18.

Preview features

[formatter] Fluent formatting of method chains (#21369)

[formatter] Keep lambda parameters on one line and parenthesize the body if it expands (#21385)

[flake8-implicit-str-concat] New rule to prevent implicit string concatenation in collections (ISC004) (#21972)

[flake8-use-pathlib] Make fixes unsafe when types change in compound statements (PTH104, PTH105, PTH109, PTH115) (#22009)

[refurb] Extend support for Path.open (FURB101, FURB103) (#21080)

Bug fixes

[pyupgrade] Fix parsing named Unicode escape sequences (UP032) (#21901)

Rule changes

[eradicate] Ignore ruff:disable and ruff:enable comments in ERA001 (#22038)

[flake8-pytest-style] Allow match and check keyword arguments without an expected exception type (PT010) (#21964)

[syntax-errors] Annotated name cannot be global (#20868)

Documentation

Add uv and ty to the Ruff README (#21996)

Document known lambda formatting deviations from Black (#21954)

Update setup.md (#22024)

[flake8-bandit] Fix broken link (S704) (#22039)

Other changes

Fix playground Share button showing "Copied!" before clipboard copy completes (#21942)

Contributors

@dylwil3

@charliecloudberry

@charliermarsh

@chirizxc

@ntBre

@zanieb

@amyreese

@hauntsaninja

@11happy

@mahiro72

@MichaReiser

@phongddo

@PeterJCLaw

... (truncated)

Changelog

Sourced from ruff's changelog.

0.14.10

Released on 2025-12-18.

Preview features

[formatter] Fluent formatting of method chains (#21369)

[formatter] Keep lambda parameters on one line and parenthesize the body if it expands (#21385)

[flake8-implicit-str-concat] New rule to prevent implicit string concatenation in collections (ISC004) (#21972)

[flake8-use-pathlib] Make fixes unsafe when types change in compound statements (PTH104, PTH105, PTH109, PTH115) (#22009)

[refurb] Extend support for Path.open (FURB101, FURB103) (#21080)

Bug fixes

[pyupgrade] Fix parsing named Unicode escape sequences (UP032) (#21901)

Rule changes

[eradicate] Ignore ruff:disable and ruff:enable comments in ERA001 (#22038)

[flake8-pytest-style] Allow match and check keyword arguments without an expected exception type (PT010) (#21964)

[syntax-errors] Annotated name cannot be global (#20868)

Documentation

Add uv and ty to the Ruff README (#21996)

Document known lambda formatting deviations from Black (#21954)

Update setup.md (#22024)

[flake8-bandit] Fix broken link (S704) (#22039)

Other changes

Fix playground Share button showing "Copied!" before clipboard copy completes (#21942)

Contributors

@dylwil3

@charliecloudberry

@charliermarsh

@chirizxc

@ntBre

@zanieb

@amyreese

@hauntsaninja

@11happy

@mahiro72

@MichaReiser

@phongddo

@PeterJCLaw

0.14.9

... (truncated)

Commits

45bbb4c Bump 0.14.10 (#22058)
42b9727 [ty] Use datatest instead of dirtest (#21937)
f7ec178 [ty] Gracefully handle client requests that can't be deserialized (#22051)
c315164 [ty] Don't suggest keyword statements when only expressions are valid
bb1955e [ty] Use cursor context in a few more places...
070e08a [ty] Move completion function to the top
bab3924 [ty] Refactor completion generation
10748b2 [flake8-pytest-style] Allow match and check keyword arguments without a...
56539db [ty] Fix some configuration panics in the LSP (#22040)
8d32ad1 [ty] Add support for attribute docstrings (#22036)
Additional commits viewable in compare view

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Bumps the datalad group in /services/datalad with 7 updates: | Package | From | To | | --- | --- | --- | | [bidsschematools](https://github.com/bids-standard/bids-specification) | `1.1.3` | `1.1.4` | | [boto3](https://github.com/boto/boto3) | `1.42.0` | `1.42.19` | | [pygit2](https://github.com/libgit2/pygit2) | `1.19.0` | `1.19.1` | | [taskiq-redis](https://github.com/taskiq-python/taskiq-redis) | `1.1.2` | `1.2.1` | | [coverage](https://github.com/coveragepy/coveragepy) | `7.12.0` | `7.13.1` | | [pytest](https://github.com/pytest-dev/pytest) | `9.0.1` | `9.0.2` | | [ruff](https://github.com/astral-sh/ruff) | `0.14.7` | `0.14.10` | Updates `bidsschematools` from 1.1.3 to 1.1.4 - [Release notes](https://github.com/bids-standard/bids-specification/releases) - [Changelog](https://github.com/bids-standard/bids-specification/blob/master/Release_Protocol.md) - [Commits](bids-standard/bids-specification@schema-1.1.3...schema-1.1.4) Updates `boto3` from 1.42.0 to 1.42.19 - [Release notes](https://github.com/boto/boto3/releases) - [Commits](boto/boto3@1.42.0...1.42.19) Updates `pygit2` from 1.19.0 to 1.19.1 - [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md) - [Commits](libgit2/pygit2@v1.19.0...v1.19.1) Updates `taskiq-redis` from 1.1.2 to 1.2.1 - [Release notes](https://github.com/taskiq-python/taskiq-redis/releases) - [Commits](taskiq-python/taskiq-redis@1.1.2...1.2.1) Updates `coverage` from 7.12.0 to 7.13.1 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](coveragepy/coveragepy@7.12.0...7.13.1) Updates `pytest` from 9.0.1 to 9.0.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@9.0.1...9.0.2) Updates `ruff` from 0.14.7 to 0.14.10 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.14.7...0.14.10) --- updated-dependencies: - dependency-name: bidsschematools dependency-version: 1.1.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: datalad - dependency-name: boto3 dependency-version: 1.42.19 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: datalad - dependency-name: pygit2 dependency-version: 1.19.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: datalad - dependency-name: taskiq-redis dependency-version: 1.2.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: datalad - dependency-name: coverage dependency-version: 7.13.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: datalad - dependency-name: pytest dependency-version: 9.0.2 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: datalad - dependency-name: ruff dependency-version: 0.14.10 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: datalad ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-01-01T13:25:57Z

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 42.86%. Comparing base (5bf4973) to head (d3f44c4).
⚠️ Report is 4 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #3700   +/-   ##
=======================================
  Coverage   42.86%   42.86%           
=======================================
  Files         640      640           
  Lines       34311    34311           
  Branches     1544     1544           
=======================================
  Hits        14709    14709           
  Misses      19463    19463           
  Partials      139      139

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dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jan 1, 2026

nellh merged commit 6e2d18a into master Jan 8, 2026
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nellh deleted the dependabot/uv/services/datalad/datalad-31e43d0644 branch January 8, 2026 18:04

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chore(deps): Bump the datalad group in /services/datalad with 7 updates#3700

chore(deps): Bump the datalad group in /services/datalad with 7 updates#3700
nellh merged 1 commit intomasterfrom
dependabot/uv/services/datalad/datalad-31e43d0644

dependabot bot commented on behalf of github Jan 1, 2026

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dependabot bot commented on behalf of github Jan 1, 2026

1.19.1 (2025-12-29)

1.2.1

What's Changed

1.2.0

What's Changed

Features

Misc

New Contributors

Version 7.13.1 — 2025-12-28

Version 7.13.0 — 2025-12-08

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

Improved documentation

0.14.10

Release Notes

Preview features

Bug fixes

Rule changes

Documentation

Other changes

Contributors

0.14.10

Preview features

Bug fixes

Rule changes

Documentation

Other changes

Contributors

0.14.9

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