Skip to content

Install pyopenms in build-push-notebooks workflow #501

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
poshul merged 3 commits into from
Feb 1, 2026
Merged

Install pyopenms in build-push-notebooks workflow #501

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
b567310
Install pyopenms in build-push-notebooks workflow
poshul Jan 30, 2026
8589333
Update workflow to install PyOpenMS dependencies
poshul Feb 1, 2026
3ccda1f
Merge branch 'master' into poshul-patch-5
poshul Feb 1, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions .github/workflows/build-push-notebooks.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@ jobs:
python3 -m pip install --upgrade pip
python3 -m pip install --upgrade jupyter
python3 -m pip install --upgrade -r requirements.txt
python3 docs/install_pyopenms.py


- name: Generating notebooks
Expand Down
4 changes: 3 additions & 1 deletion .github/workflows/test-pr-sphinx.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,9 @@ jobs:
python-version: '3.11' # Version range or exact version of a Python version to use, using SemVer's version range syntax

- name: Installing Dependencies
run: pip install -r docs/requirements.txt
run: |
pip install -r docs/requirements.txt
python3 docs/install_pyopenms.py

- name: Install PyOpenMS if URL is provided
if: ${{ inputs.pyopenms_wheel_url != '' }}
Expand Down