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Cemrg Advanced Tools
Some functionalities in CemrgApp are calls to either an executable or a docker container. This page teaches you how to use them from the command line, in case that is helpful to you. We assume you have knowledge of how to move around in a terminal and some of its commands.
You need to have Docker installed. Check our guides for all operating systems.
We assume your data is in folder DATA=/path/to/data, and that your file is called image.nii. You need to do the following:
# Copy your data to a file called test.nii
cp $DATA/image.nii $DATA/test.nii
# Run docker container
docker run --rm --volume=$DATA:/data orodrazeghi/cemrgnet Output is saved to a file called output.nii inside your same $DATA folder
The Cardiac Electro-Mechanics Research Group (CEMRG) at King's College London applies statistical, machine learning and simulation approaches to combine experimental and clinical data with physics and biology to study the physiology, pathology, diagnosis and treatment of the heart.